1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttacgcttggtgagaagatgatttatttggagatggtggacgacgcctatttctgttttctggctgtctaattctgatgatggcgtctcatgtttttcagGTGCGTTTTGCGTGAAGTGGGTTTTAAGGATGGTTCTAAACAAGGTGCTCGAGCTATTTTGTGTGAAGAAGAAGGATTCCAAGAAGAAAG
species | Oryza sativa |
transcript | LOC_Os01g12950.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCCCCGAGGCCGCCGCGGTGGCGGGCTCTTGGGCTGGCTCCGCCTCA-G GTGCGTTTTGCGTGAAGTGGGTTTCAAGGATGGTTCTAAACCAGGTGCTCEST: gi|88317369|gb|CI628018.1|CI628018
genomic: TTCCCCGAGGCCGCCGCGGTGGCGGGCTCTTGGGCTGGCTCCGC-TCAAGgtacaatccg ... tgtttttcagGTGCGTTTTGCGTGAAGTGGGTTTTAAGGATGGTTCTAAACAAGGTGCTC
EST: TTTCCCCGAGGCCGCCGCGGTGGCGGGCTCTTGGGCTGGCTCCGCTCAAG GTGCGTTTTGCGTGAAGTGGGTTTTAAGGATGGTTCTAAACAAGGTGCTCGEST: gi|88369555|gb|CI582750.1|CI582750
genomic: CTTCCCCGAGGCCGCCGCGGTGGCGGGCTCTTGGGCTGGCTCCGCTCAAGgtacaatccg ... tgtttttcagGTGCGTTTTGCGTGAAGTGGGTTTTAAGGATGGTTCTAAACAAGGTGCTCG
EST: CTTCCCCGAGGCCGCCGCGGTGGCGGGCTCTTGGGCTGGCTCCGCTCAAG GTGCGTTTTGCGTGAAGTGGGTTTTAAGGATGGTTCTAAACAAGGTGCTCG
genomic: CTTCCCCGAGGCCGCCGCGGTGGCGGGCTCTTGGGCTGGCTCCGCTCAAGgtacaatccg ... tgtttttcagGTGCGTTTTGCGTGAAGTGGGTTTTAAGGATGGTTCTAAACAAGGTGCTCG
cctatttctgttttctggctgtctaattctgatgatggcgtctcatgtttttcagGTGCGTTTTGCGTGAAGTGGGTTTTAAGGATGGTTCTAAACAAGGTGCTCGAGCTATTTTGTGTGAAGAAGAAGGATTCCAAGAAGAAAG
ttctgat putative branch site (score: 3)
tgtttttc putative PPT
atgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacgcttggtgagaagatgatttatttggagatggtggacgacgcctatttctgttttctggctgtctaattctgatgatggcgtctcatgtttttcagGTGCGTTTTGCGTGAAGTGGGTTTTAAGGATGGTTCTAAACAAGGTGCTCGAGCTATTTTGTGTGAAGAAGAAGGATTCCAAGAAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA