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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggggaaagctagctcaagctcaccctcaatctcaatctcaagctggggcttgcaaatcttgttctcctctttgattttattttctcaagtgttgctgctcacttgtgctcagctcagagaaagatctgatttagtgattttgattctcgttttggttggggactgttggttgcagGTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATGTGTTCATCCTGTCCTTCTCCCTGATAAGCAGGGCGAGCTATGAGAATGT

Basic information

species Oryza sativa
transcript LOC_Os01g12900.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7134839|gb|AU082699.1|AU082699
EST:     TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAG                         GTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATG
genomic: TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAGgtggggaaag ... ttggttgcagGTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATG
EST: gi|88396989|gb|CI578138.1|CI578138
EST:     TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAG                         GTCAGGAGGATTAGAGGAGGTTGAGGGCTCTGAGGCTAGAGGGGAGCCGAT
genomic: TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAGgtggggaaag ... ttggttgcagGTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAG-CTACAGGGGAGCCGAT
EST: gi|88740975|gb|CI764483.1|CI764483
EST:     TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAG                         GTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATG
genomic: TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAGgtggggaaag ... ttggttgcagGTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATG
EST: gi|88313328|gb|CI594958.1|CI594958
EST:     TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAG                         GTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATG
genomic: TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAGgtggggaaag ... ttggttgcagGTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATG
EST: gi|38482617|gb|CF966571.1|CF966571
EST:     TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGGCTCTGGGACACTGCAG                         GTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATG
genomic: TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAGgtggggaaag ... ttggttgcagGTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATG
EST: gi|427824|gb|D23963.1|D23963
EST:     TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGACTATGGGACACTGCAG                         GTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATG
genomic: TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAGgtggggaaag ... ttggttgcagGTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagatctgatttagtgattttgattctcgttttggttggggactgttggttgcagGTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATGTGTTCATCCTGTCCTTCTCCCTGATAAGCAGGGCGAGCTATGAGAATGT
                 ttttgat  putative branch site (score: 4)
                attttgatt  TA-rich tract