1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agtagttggcatatatccaatcataattacagttatagagttgatacgcatactaccaaatagtttaatgtgtaatttgctatgtaaaactcttttacagGTGGCAGATTTCGGACTTGCAAAATTGACTTCTGATAATAACACTCATGTTTCAACCAGAGTAATGGGCACATTTGG
species | Oryza sativa |
transcript | LOC_Os01g12720.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGACATAAAGTCAGCAAATATTCTTCTTGACGCGAGATTTGAGGCAAAG GTGGCAGATTTCGGACTTGCAAAATTGACTTCTGATAATAACACTCATGTTEST: gi|58590206|gb|CF988514.1|CF988514
genomic: GTGACATAAAGTCAGCAAATATTCTTCTTGACGCGAGATTTGAGGCAAAGgtgcgctata ... tcttttacagGTGGCAGATTTCGGACTTGCAAAATTGACTTCTGATAATAACACTCATGTT
EST: GTGACATAAAGTCAGCAAATATTCTTCTTGACGCGAGATTTGAGGCAAAG GTGGCAGATTTCGGACTTGCAAAATTGACTTCTGATAATAACACTCATGTTEST: gi|66912790|gb|CX099638.1|CX099638
genomic: GTGACATAAAGTCAGCAAATATTCTTCTTGACGCGAGATTTGAGGCAAAGgtgcgctata ... tcttttacagGTGGCAGATTTCGGACTTGCAAAATTGACTTCTGATAATAACACTCATGTT
EST: GTGACATAAAGTCAGCAAATATTCTTCTTGACGCGAGATTTGAGGCAAAG GTGGCAGATTTCGGACTTGCAAAATTGACTTCTGATAATAACACTCATGTT
genomic: GTGACATAAAGTCAGCAAATATTCTTCTTGACGCGAGATTTGAGGCAAAGgtgcgctata ... tcttttacagGTGGCAGATTTCGGACTTGCAAAATTGACTTCTGATAATAACACTCATGTT
acgcatactaccaaatagtttaatgtgtaatttgctatgtaaaactcttttacagGTGGCAGATTTCGGACTTGCAAAATTGACTTCTGATAATAACACTCATGTTTCAACCAGAGTAATGGGCACATTTGG
gtttaat putative branch site (score: 18)
ctcttttac putative PPT
aaatagtttaatgtgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtagttggcatatatccaatcataattacagttatagagttgatacgcatactaccaaatagtttaatgtgtaatttgctatgtaaaactcttttacagGTGGCAGATTTCGGACTTGCAAAATTGACTTCTGATAATAACACTCATGTTTCAACCAGAGTAATGGGCACATTTGG
- - - tggcata
- - - - - - - - - - - - - - - - - - - - - - - -gcatact
- - - - - - - - - - - - - - - - - - - - - - - - - - - accaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctatg