1 5' 3' | 2 5' 3' | 3 5' 3' |
...accaaattctattcaaaactttttttctgatttgtgaataagttgatggtgcagtctgtctgactctagctaattgtgatctctttttcatattcttcagGTGCATGTCCTACCTAGAGAAATCCTGGGGTTCTCCACTTTCGGTCTGTCCATGTGGCTCCTCAGGTGGTTGTCTGTCCAAACGGTGGATTGGCTGGTAC
species | Oryza sativa |
transcript | LOC_Os01g12490.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
atggtgcagtctgtctgactctagctaattgtgatctctttttcatattcttcagGTGCATGTCCTACCTAGAGAAATCCTGGGGTTCTCCACTTTCGGTCTGTCCATGTGGCTCCTCAGGTGGTTGTCTGTCCAAACGGTGGATTGGCTGGTAC
agctaat putative branch site (score: 2)
tctctttttcatattc putative PPT
tttttcatattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accaaattctattcaaaactttttttctgatttgtgaataagttgatggtgcagtctgtctgactctagctaattgtgatctctttttcatattcttcagGTGCATGTCCTACCTAGAGAAATCCTGGGGTTCTCCACTTTCGGTCTGTCCATGTGGCTCCTCAGGTGGTTGTCTGTCCAAACGGTGGATTGGCTGGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
accaaat
- - - - - - - - - - - - ttctgat
- - - - - - - - - - - - - - - - - - - - -gttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtctg