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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaagaaagctgggggggactgtgtcagtgtgtgttggtgtgcaactctgtgcatgatggctcacatcaacgttacatcggtttcgcagATGGCGTCTGCTGCACGACGTGAGAGAGGCGGGGTACCAGGAAACACTTGTCCGTGCTTGGACGTAACGTGTCATGTACAAGTCCCGGGAATCCGGATTC

Basic information

species Oryza sativa
transcript LOC_Os01g12250.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88830345|gb|CI076601.1|CI076601
EST:     CATGACACGACACGACGATGTGCCTCATGAGGGCATGCATGCCGGGCCAG                         ATGGCGTCTGCTGCACGACGTGAGAGAGGCGGGGTACCAGGAAACACTTGT
genomic: CATGACACGACACGACGATGTGCCTCATGAGGGCATGCATGCCGGGCCAGgtgaagaaag ... ggtttcgcagATGGCGTCTGCTGCACGACGTGAGAGAGGCGGGGTACCAGGAAACACTTGT
EST: gi|88288901|gb|CI518032.1|CI518032
EST:     CATGACACGACACGACGATGTGCCTCATGAGGGCATGCATGCCGGGCCAG                         ATGGCGTCTGCTGCACGACGTGAGAGAGGCGGGGTACCAGGAAACACTTGT
genomic: CATGACACGACACGACGATGTGCCTCATGAGGGCATGCATGCCGGGCCAGgtgaagaaag ... ggtttcgcagATGGCGTCTGCTGCACGACGTGAGAGAGGCGGGGTACCAGGAAACACTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtgtgcaactctgtgcatgatggctcacatcaacgttacatcggtttcgcagATGGCGTCTGCTGCACGACGTGAGAGAGGCGGGGTACCAGGAAACACTTGTCCGTGCTTGGACGTAACGTGTCATGTACAAGTCCCGGGAATCCGGATTC
                        ggctcac  putative branch site (score: 3)