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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttgtctcacggttttaactgtaattagttttttttattagtgcaagctaaaaactttatacccctggatctaaccaccctgtaaattgctgcaatgcagGGGCCAAGATTGGGGCGACACGGCGAGTGCGACGTGCATGGGGCAGACGCGGCCGGTGAACGGCACGGCGTACCCCGGGGGGCCGATCCCGCAGCAGGCG

Basic information

species Oryza sativa
transcript LOC_Os01g11810.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87009911|gb|CI277412.1|CI277412
EST:     CAGACCAACACCAGAGTCTTCTTCCAGGGCATCTCCCCCTCTCACTACAG                         GGGCCAAGATTGGGGCGACACGGCGAGTGCGACGTGCATGGGGCAGACGCG
genomic: CAGACCAACACCAGAGTCTTCTTCCAGGGCATCTCCCCCTCTCACTACAGgttaaacatc ... tgcaatgcagGGGCCAAGATTGGGGCGACACGGCGAGTGCGACGTGCATGGGGCAGACGCG
EST: gi|88985679|gb|CI016388.1|CI016388
EST:     CACCAGAGTCTTCTTCCAGGGCATCTCCCCCTCTCACTACAG                         GGGCCAAGATTGGGGCGACACGGCGAGTGCGACGTGCATGGGGCAGACGCG
genomic: CACCAGAGTCTTCTTCCAGGGCATCTCCCCCTCTCACTACAGgttaaacatc ... tgcaatgcagGGGCCAAGATTGGGGCGACACGGCGAGTGCGACGTGCATGGGGCAGACGCG
EST: gi|29673718|gb|CB669993.1|CB669993
EST:     CAGACCAACACCAGAGTCTTCTTCCAGGGCATCTCCCCCTCTCACTACAG                         GGGCCAAGATTGGGGCGACACGGCGAGTGCGACGTGCATGGGGCAGACGCG
genomic: CAGACCAACACCAGAGTCTTCTTCCAGGGCATCTCCCCCTCTCACTACAGgttaaacatc ... tgcaatgcagGGGCCAAGATTGGGGCGACACGGCGAGTGCGACGTGCATGGGGCAGACGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctaaaaactttatacccctggatctaaccaccctgtaaattgctgcaatgcagGGGCCAAGATTGGGGCGACACGGCGAGTGCGACGTGCATGGGGCAGACGCGGCCGGTGAACGGCACGGCGTACCCCGGGGGGCCGATCCCGCAGCAGGCG
                       atctaac  putative branch site (score: 2)
     aaaactttata  TA-rich tract