1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gattttattttagaactagaacttcctggaaaaaatatgtttattgaaggagttagccaattcgataatatggttaatacatctactttcttatctgcagATCTTGATGTCAAGCTGGAAAGTTCACCGACAATTCTGGCATGATATCGTCAGCGAGATTCAATGCTGTCTTGTAAATTTTGGCTATGTAGGAAGTCTAA
species | Oryza sativa |
transcript | LOC_Os01g11580.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATGGCTCTGATGCTGCACAGTCACCCAGAACGTAACATCTATAGGCCAG ATCTTGATGTCAAGCTGGAAAGTTCACCGACAATTCTGGCATGATATCGTCEST: gi|89166471|gb|CI103757.1|CI103757
genomic: GATGGCTCTGATGCTGCACAGTCACCCAGAACGTAACATCTATAGGCCAGgtatgtttag ... ttatctgcagATCTTGATGTCAAGCTGGAAAGTTCACCGACAATTCTGGCATGATATCGTC
EST: CACAGTCACCCAGAACGTAACATCTATAGGCCAG ATCTTGATGTCAAGCTGGAAAGTTCACCGACAATTCTGGCATGATATCGTCEST: gi|89166888|gb|CI104174.1|CI104174
genomic: CACAGTCACCCAGAACGTAACATCTATAGGCCAGgtatgtttag ... ttatctgcagATCTTGATGTCAAGCTGGAAAGTTCACCGACAATTCTGGCATGATATCGTC
EST: TGCACAGTCACCCAGAACGTAANATCTATAGGCCAG ATCTTGATGTCAAGCTGGAAAGTTCACCGACAATTCTGGCATGANATCGTCEST: gi|88228863|gb|CI226714.1|CI226714
genomic: TGCACAGTCACCCAGAACGTAACATCTATAGGCCAGgtatgtttag ... ttatctgcagATCTTGATGTCAAGCTGGAAAGTTCACCGACAATTCTGGCATGATATCGTC
EST: GATGGCTCTGATGCTGCACAGTCACCCAGAACGTAAGATCTATAGGCCAG ATCTAGATGTCAAGCTGGAAAGTTCACCGACAATTCTGGCATGATATCGTCEST: gi|89168898|gb|CI020979.1|CI020979
genomic: GATGGCTCTGATGCTGCACAGTCACCCAGAACGTAACATCTATAGGCCAGgtatgtttag ... ttatctgcagATCTTGATGTCAAGCTGGAAAGTTCACCGACAATTCTGGCATGATATCGTC
EST: GATGGCTCTGATGCTGCACAGTCACCCAGAACGTAGCATCTATAGGCCAG ATCTTGATGTCAAGCTGGAAAGTTCACCGACAATTCTGGCATGATATCGTCEST: gi|29635205|gb|CB640214.1|CB640214
genomic: GATGGCTCTGATGCTGCACAGTCACCCAGAACGTAACATCTATAGGCCAGgtatgtttag ... ttatctgcagATCTTGATGTCAAGCTGGAAAGTTCACCGACAATTCTGGCATGATATCGTC
EST: GATGGCTCTGATGCTGCACAGTCACCCAGAACGTAACATCTATAGGCCAG ATCTTGATGTCAAGCTGGAAAGTTCACCGACAATTCTGGCATGATATCGTCEST: gi|29632451|gb|CB637460.1|CB637460
genomic: GATGGCTCTGATGCTGCACAGTCACCCAGAACGTAACATCTATAGGCCAGgtatgtttag ... ttatctgcagATCTTGATGTCAAGCTGGAAAGTTCACCGACAATTCTGGCATGATATCGTC
EST: GATGGCTCTGATGCTGCACAGTCACCCAGAACGTAACATCTATAGGCCAG ATCTTGATGTCAAGCTGGAAAGTTCACCGACAATTCTGGCATGATATCGTCEST: gi|58661552|gb|CK050232.1|CK050232
genomic: GATGGCTCTGATGCTGCACAGTCACCCAGAACGTAACATCTATAGGCCAGgtatgtttag ... ttatctgcagATCTTGATGTCAAGCTGGAAAGTTCACCGACAATTCTGGCATGATATCGTC
EST: GATGGCTCTGATGCTGCACAGTCACCCAGAACGTAACATCTATAGGTCAG ATCTTGATGTCCAGCTGGAAAGT-CACCGAC
genomic: GATGGCTCTGATGCTGCACAGTCACCCAGAACGTAACATCTATAGGCCAGgtatgtttag ... ttatctgcagATCTTGATGTCAAGCTGGAAAGTTCACCGAC
gaaggagttagccaattcgataatatggttaatacatctactttcttatctgcagATCTTGATGTCAAGCTGGAAAGTTCACCGACAATTCTGGCATGATATCGTCAGCGAGATTCAATGCTGTCTTGTAAATTTTGGCTATGTAGGAAGTCTAA
ggttaat putative branch site (score: 10)
tctactttcttatct putative PPT
ataatatggttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattttattttagaactagaacttcctggaaaaaatatgtttattgaaggagttagccaattcgataatatggttaatacatctactttcttatctgcagATCTTGATGTCAAGCTGGAAAGTTCACCGACAATTCTGGCATGATATCGTCAGCGAGATTCAATGCTGTCTTGTAAATTTTGGCTATGTAGGAAGTCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - ttcctgg
- - - - - - - - - - - - - - -aaaaaat