1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATATCTTTCACAATGACCCACTCCCACCTCTAGGAGCAAGAGCAAACCAATCTATCAAGCTGAGAAAATTCATTATTTCTCCATATGATTCCCGTTACAGgtaagatcgatatttgcttgctcatatatgaatatgcacacaaaacacagttaatttacatagttagttcctttttgtttatgtctgcatag
species | Oryza sativa |
transcript | LOC_Os01g11250.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCTATCAAGCTGAGAAAATTCATTATTTCTCCATATGATTCCCGTTACAG GACCTGGGAGACGTTCTTGCTCGTGCTTGTTGTTTATTCAGCTTGGATCTGEST: gi|88903771|gb|CI711473.1|CI711473
genomic: TCTATCAAGCTGAGAAAATTCATTATTTCTCCATATGATTCCCGTTACAGgtaagatcga ... gtctgcatagGACCTGGGAGACGTTCTTGCTCGTGCTTGTTGTTTATTCAGCTTGGATCTG
EST: TCTATCAAGCTGAGAAAATTCATTATTTCTCCATATGATTCCCGTTACAG GACCTGGGAGACGTTCTTGCTCGTGCTTGTTGTTTATTCAGCTTGGATCTGEST: gi|88447712|gb|CI579788.1|CI579788
genomic: TCTATCAAGCTGAGAAAATTCATTATTTCTCCATATGATTCCCGTTACAGgtaagatcga ... gtctgcatagGACCTGGGAGACGTTCTTGCTCGTGCTTGTTGTTTATTCAGCTTGGATCTG
EST: TCTATCAAGCTGAGAAAATTCATTATTTCTCCATATGATTCCCGTTACAG GACCTGGGAGACGTTCTTGCTCGTGCTTGTTGTTTATTCAGCTTGGATCTGEST: gi|88453529|gb|CI680371.1|CI680371
genomic: TCTATCAAGCTGAGAAAATTCATTATTTCTCCATATGATTCCCGTTACAGgtaagatcga ... gtctgcatagGACCTGGGAGACGTTCTTGCTCGTGCTTGTTGTTTATTCAGCTTGGATCTG
EST: TCTATCAAGCTGAGAAAATTCATTATTTCTCCATATGATTCCCGTTACAG GACCTGGGAGACGTTCTTGCTCGTGCTTGTTGTTTATTCAGCTTGGATCTG
genomic: TCTATCAAGCTGAGAAAATTCATTATTTCTCCATATGATTCCCGTTACAGgtaagatcga ... gtctgcatagGACCTGGGAGACGTTCTTGCTCGTGCTTGTTGTTTATTCAGCTTGGATCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATCTTTCACAATGACCCACTCCCACCTCTAGGAGCAAGAGCAAACCAATCTATCAAGCTGAGAAAATTCATTATTTCTCCATATGATTCCCGTTACAGgtaagatcgatatttgcttgctcatatatgaatatgcacacaaaacacagttaatttacatagttagttcctttttgtttatgtctgcatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA