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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttcatttgttcgacagaaatggaggtggaaagaagctaattaattcaattttgatgcttaatttatgtgtgaaaatgcatgtagCGGGGCAGCGGCGGCGGCGCCGGTTGTGGGGTGGCCGCCGGTGCGGTCGTTCCGGCGGAACCTCGCCTCGTCGTCGTCATCGTCGTCCAAGCAGGCGCCG

Basic information

species Oryza sativa
transcript LOC_Os01g09450.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g09450.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G104176_T01 (Zea mays), 3'ss of exon 2
-------------------------------------------------gtttgttcatttgttcgacagaaatggaggtggaaagaagctaattaattcaattttgatgcttaatttatgtgtgaaaatgcatgtagCGGGGCAGCGGCGGCGGCGCCGGTTGTGGGGTGGCCGCCGGTGCGGTCGTTCCGGCGGAACCTCGCCTCGTCGTCGTCATCGTCGTCCAAGCAGGCGCCG
                                                  | | |   || | |   |  ||| | |  ||   | | |   |||  ||   | || ||| |   |  ||   | ||   ||  |   | || ||||||  ||||||||||| |||||||||||||||||||||||||||||| ||||||| ||| | || || ||   | ||||   |  |      
gtgggtggtggtggtggtggtggtgccgggctgccgggtgttgctgttgttctctctgttcgcttttctaaaaggcaactgtctaaaggtccattttttt--tcttaatggtcgttcaat---tcaatccgccagGGTCAGGCCAGCGGGCGCGGCGCCGGTGGTGGGGTGGCCGCCGGTGCGGTCGTTCCGGAGGAACCTGGCCGCCTCCTCCTCCAGGCCGTCGTCGGGGAAA---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagaagctaattaattcaattttgatgcttaatttatgtgtgaaaatgcatgtagCGGGGCAGCGGCGGCGGCGCCGGTTGTGGGGTGGCCGCCGGTGCGGTCGTTCCGGCGGAACCTCGCCTCGTCGTCGTCATCGTCGTCCAAGCAGGCGCCG
       taattaattcaatttt  TA-rich tract