1 5' 3' | 2 5' 3' |
...gccttcctgtcatctcatgttggcgcttgcatattaggactaatttggaaatatcctgtacaaacttggaataaatagtttatattgtttttctctgtagAGACAAAGGATATTCAAAAGCCTGATGAACCTCAGCCTGGGGAAACTCAGGCTGAATCTCCTCTACCTGAAGCTTTGCAACCAGAATCATCCCTGCCCGT
species | Oryza sativa |
transcript | LOC_Os01g08510.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
tggaaatatcctgtacaaacttggaataaatagtttatattgtttttctctgtagAGACAAAGGATATTCAAAAGCCTGATGAACCTCAGCCTGGGGAAACTCAGGCTGAATCTCCTCTACCTGAAGCTTTGCAACCAGAATCATCCCTGCCCGT
tattgtttttctct CT-rich tract
ttggaataaatagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccttcctgtcatctcatgttggcgcttgcatattaggactaatttggaaatatcctgtacaaacttggaataaatagtttatattgtttttctctgtagAGACAAAGGATATTCAAAAGCCTGATGAACCTCAGCCTGGGGAAACTCAGGCTGAATCTCCTCTACCTGAAGCTTTGCAACCAGAATCATCCCTGCCCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
-ccttcct
- - - - - - - -catgttg
- - - - - - - - - - - - gcttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - cctgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataaa