1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgagtttagttcgccttccaagtcccaaaccaatcacagatgccactaatcaatctccgattttataacgacaataaccacagttccaactaaccaatcccaatttatcttacatattgtatgggtttgtcgcgtctgtctgacgaccgaaacaccgtgccaatgcttttgcagGTGTGGCCGTGGAGCGCGACACGCCGACCAGGCTACTGGAGGACAAGTCGTCTCTCTTCTCCAAGCTCGTAGCGGAATACACGATGAGATCGACGCACAC
species | Oryza sativa |
transcript | LOC_Os01g07870.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCGGATCACCTCCGTCCTTGACAGCGACATGGTCTTGCTCCTTGACAACG GTGTGGCCGTGGAGCGCGACACGCCGACCAGGCTACTGGAGGACAAGTCGTEST: gi|87038101|gb|CI190725.1|CI190725
genomic: CCGGATCACCTCCGTCCTTGACAGCGACATGGTCTTGCTCCTTGACAACGgtgagtttag ... gcttttgcagGTGTGGCCGTGGAGCGCGACACGCCGACCAGGCTACTGGAGGACAAGTCGT
EST: CCGGATCACCTCCGTCCTTGACAGCGACATGGTCTTGCTCCTTGACAACG GTGTGGCCGTGGAGCGCGACACGCCGACCAGGCTACTGGAGGACAAGTCGTEST: gi|29638724|gb|CB643733.1|CB643733
genomic: CCGGATCACCTCCGTCCTTGACAGCGACATGGTCTTGCTCCTTGACAACGgtgagtttag ... gcttttgcagGTGTGGCCGTGGAGCGCGACACGCCGACCAGGCTACTGGAGGACAAGTCGT
EST: CCGGATCACCTCCGTCCTTGACAGCGACATGGTCTTGCTCCTTGACAACG GTGTGGCCGTGGAGCGCGACACGCCGACCAGGCTACTGGAGGACAAGTCGTEST: gi|86437514|gb|CI119236.1|CI119236
genomic: CCGGATCACCTCCGTCCTTGACAGCGACATGGTCTTGCTCCTTGACAACGgtgagtttag ... gcttttgcagGTGTGGCCGTGGAGCGCGACACGCCGACCAGGCTACTGGAGGACAAGTCGT
EST: CCGGATCACCTCCGTCCTTGACAGCGACATGGTCTTGCTCCTTGACAACG GTGTGGCCGTGGAGCGCGACACGCCGACCAGGCTACTGGAGGACAAGTCGTEST: gi|88575029|gb|CI666798.1|CI666798
genomic: CCGGATCACCTCCGTCCTTGACAGCGACATGGTCTTGCTCCTTGACAACGgtgagtttag ... gcttttgcagGTGTGGCCGTGGAGCGCGACACGCCGACCAGGCTACTGGAGGACAAGTCGT
EST: CCGGATCACCTCCGTCCTTGACAGCGACATGGTCTTGCTCCTTGACAACG GTGTGGCCGTGGAGCGCGACACGCCGACCAGGCTACTGGAGGACAAGTCGTEST: gi|33810075|gb|CF330925.1|CF330925
genomic: CCGGATCACCTCCGTCCTTGACAGCGACATGGTCTTGCTCCTTGACAACGgtgagtttag ... gcttttgcagGTGTGGCCGTGGAGCGCGACACGCCGACCAGGCTACTGGAGGACAAGTCGT
EST: GACAGCGACATGGTCTTGCTCCTTGACAACG GTGTGGCCGTGGAGCGCGACACGCCGACCAGGCTACTGGAGGAGAAGTCGTEST: gi|29638723|gb|CB643732.1|CB643732
genomic: GACAGCGACATGGTCTTGCTCCTTGACAACGgtgagtttag ... gcttttgcagGTGTGGCCGTGGAGCGCGACACGCCGACCAGGCTACTGGAGGACAAGTCGT
EST: CCGGATCACCTCCGTCCTTGACAGCGACATGGTCTTGCTCCTTGACAACG GTGTGGCCGTGGAGCGCGACACGCCGACCAGGCTACTGGAGGACAAGTCGT
genomic: CCGGATCACCTCCGTCCTTGACAGCGACATGGTCTTGCTCCTTGACAACGgtgagtttag ... gcttttgcagGTGTGGCCGTGGAGCGCGACACGCCGACCAGGCTACTGGAGGACAAGTCGT
tatgggtttgtcgcgtctgtctgacgaccgaaacaccgtgccaatgcttttgcagGTGTGGCCGTGGAGCGCGACACGCCGACCAGGCTACTGGAGGACAAGTCGTCTCTCTTCTCCAAGCTCGTAGCGGAATACACGATGAGATCGACGCACAC
gtctgac putative branch site (score: 8)
tgctttt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtttagttcgccttccaagtcccaaaccaatcacagatgccactaatcaatctccgattttataacgacaataaccacagttccaactaaccaatcccaatttatcttacatattgtatgggtttgtcgcgtctgtctgacgaccgaaacaccgtgccaatgcttttgcagGTGTGGCCGTGGAGCGCGACACGCCGACCAGGCTACTGGAGGACAAGTCGTCTCTCTTCTCCAAGCTCGTAGCGGAATACACGATGAGATCGACGCACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC