1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagtaacatttgagtgaatttgttgcattgcaatcatgcacgtatatgcatctgttcgctgtatgtatgtgttatcagtgtgctactactacttcttcttcagATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCAGGAAGATGGCAGCCCATTCATCCCAGGTTAATTAAGAGTTAAGAAGCAA
species | Oryza sativa |
transcript | LOC_Os01g07480.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAGCGCGGCAAATA ATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCAEST: gi|87015761|gb|CI277719.1|CI277719
genomic: ATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAGCGCGGCAAATAgtaagtaaca ... tcttcttcagATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCA
EST: ATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAGCGCGGCAAATA ATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCAEST: gi|89194498|gb|CI116935.1|CI116935
genomic: ATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAGCGCGGCAAATAgtaagtaaca ... tcttcttcagATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCA
EST: ATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAGCGCGGCAAATA ATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCA
genomic: ATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAGCGCGGCAAATAgtaagtaaca ... tcttcttcagATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCA
catctgttcgctgtatgtatgtgttatcagtgtgctactactacttcttcttcagATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCAGGAAGATGGCAGCCCATTCATCCCAGGTTAATTAAGAGTTAAGAAGCAA
ctactacttcttcttc CT-rich tract
tatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaacatttgagtgaatttgttgcattgcaatcatgcacgtatatgcatctgttcgctgtatgtatgtgttatcagtgtgctactactacttcttcttcagATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCAGGAAGATGGCAGCCCATTCATCCCAGGTTAATTAAGAGTTAAGAAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA