1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaaaccaatgtttttttttcctcctctcccccctctgttatatccataagaacaggtgatagtctctaatgctcttctcagtctcatctgttctgttcttcaaccgattttctttagGACTTCAGCTCATCATGGGACATCCGAGCGACACCGACGTTCTTCTTCCTAAAGAACGGGGAGCAGGTGGACAAGCTCGTCGGCGCCAACAAGCCGGAGC
species | Oryza sativa |
transcript | LOC_Os01g07376.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGACATACCCCCAGTTCATGTTCTTGACTATAGATGTCGACGAGTTAATG GACTTCAGCTCATCATGGGACATCCGAGCGACACCGACGTTCTTCTTCCTAEST: gi|88827894|gb|CI778459.1|CI778459
genomic: AGACATACCCCCAGTTCATGTTCTTGACTATAGATGTCGACGAGTTAATGgtaaaaccaa ... ttttctttagGACTTCAGCTCATCATGGGACATCCGAGCGACACCGACGTTCTTCTTCCTA
EST: AGACATACCCCCAGTTCATGTTCTTGACTATAGATGTCGACGAGTTAATG GACTTCAGCTCATCATGEST: gi|58593123|gb|CF991431.1|CF991431
genomic: AGACATACCCCCAGTTCATGTTCTTGACTATAGATGTCGACGAGTTAATGgtaaaaccaa ... ttttctttagGACTTCAGCTCATCATG
EST: AGACATACCCCCAGTTCATGTTCTTGACTATAGATGTCGACGAGTTAATG GACTTCAGCTCATCATGGGACATCCGAGCGACACCGACGTTCTTCTTCCTAEST: gi|218497249|gb|FG946477.1|FG946477
genomic: AGACATACCCCCAGTTCATGTTCTTGACTATAGATGTCGACGAGTTAATGgtaaaaccaa ... ttttctttagGACTTCAGCTCATCATGGGACATCCGAGCGACACCGACGTTCTTCTTCCTA
EST: AGACATACCCCCAGTTCATGTTCTTGACTATAGATGTCGACGAGTTAATG GACTTCAGCTCATCATGGGACATCCGAGCGACACCGACGTTCTTCTTCCTA
genomic: AGACATACCCCCAGTTCATGTTCTTGACTATAGATGTCGACGAGTTAATGgtaaaaccaa ... ttttctttagGACTTCAGCTCATCATGGGACATCCGAGCGACACCGACGTTCTTCTTCCTA
tctctaatgctcttctcagtctcatctgttctgttcttcaaccgattttctttagGACTTCAGCTCATCATGGGACATCCGAGCGACACCGACGTTCTTCTTCCTAAAGAACGGGGAGCAGGTGGACAAGCTCGTCGGCGCCAACAAGCCGGAGC
ctctaat putative branch site (score: 7)
ttttcttt putative PPT
attttcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaccaatgtttttttttcctcctctcccccctctgttatatccataagaacaggtgatagtctctaatgctcttctcagtctcatctgttctgttcttcaaccgattttctttagGACTTCAGCTCATCATGGGACATCCGAGCGACACCGACGTTCTTCTTCCTAAAGAACGGGGAGCAGGTGGACAAGCTCGTCGGCGCCAACAAGCCGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT