1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTTTTAAAAAAATCAATAAGTTCAAGAAGATTCCCTTGCTCTCCTGACTTCTCCACCCCGTTCCAAGAACAAAGCAGACAGAGAGCGAAGAAGCAACAAGgtgagcccatgcttgattccttgatccatattagcttattcttagcaaccactcgctgtttcttgattttctctgcccgattcgattccgtaaccatggg...
species | Oryza sativa |
transcript | LOC_Os01g07250.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCCACCCCGTTCCAAGAACAAAGCAGACAGAGAGCGAAGAAGCAACAAG GCAAAATGTGTTCCATAAGGAGCTTTGCTTTTGTGCTGGTATTAGCATTTTEST: gi|88377891|gb|CI638025.1|CI638025
genomic: CTCCACCCCGTTCCAAGAACAAAGCAGACAGAGAGCGAAGAAGCAACAAGgtgagcccat ... ctgcaagcagGCAAAATGTGTTCCATAAGGAGCTTTGCTTTTGTGCTGGTATTAGCATTTT
EST: CTCCACCCCGTTCCAAGAACAAAGCAGACAGAGAGCGAAGAAGCAACAAG GCAAAATGTGTTCCATAAGGAGCTTTGCTTTTGTGCTGGTATTAGCATTTTEST: gi|88338986|gb|CI677804.1|CI677804
genomic: CTCCACCCCGTTCCAAGAACAAAGCAGACAGAGAGCGAAGAAGCAACAAGgtgagcccat ... ctgcaagcagGCAAAATGTGTTCCATAAGGAGCTTTGCTTTTGTGCTGGTATTAGCATTTT
EST: CTCCACCCCGTTCCAAGAACAAAGCAGACAGAGAGCGAAGAAGCAACAAG GCAAAATGTGTTCCATAAGGAGCTTTGCTTTTGTGCTGGTATTAGCATTTTEST: gi|88375367|gb|CI681135.1|CI681135
genomic: CTCCACCCCGTTCCAAGAACAAAGCAGACAGAGAGCGAAGAAGCAACAAGgtgagcccat ... ctgcaagcagGCAAAATGTGTTCCATAAGGAGCTTTGCTTTTGTGCTGGTATTAGCATTTT
EST: CTCCACCCCGTTCCAAGAACAAAGCAGACAGAGAGCGAAGAAGCAACAAG GCAAAATGTGTTCCATAAGGAGCTTTGCTTTTGTGCTGGTATTAGCATTTTEST: gi|88732528|gb|CI755705.1|CI755705
genomic: CTCCACCCCGTTCCAAGAACAAAGCAGACAGAGAGCGAAGAAGCAACAAGgtgagcccat ... ctgcaagcagGCAAAATGTGTTCCATAAGGAGCTTTGCTTTTGTGCTGGTATTAGCATTTT
EST: AGACAGAGAGCGAAGAAGCAACAAG GCAAAATGTGTTCCATAAGGAGCTTTGCTTTTGTGCTGGTATTAGCATTTTEST: gi|25797979|gb|CA753940.1|CA753940
genomic: AGACAGAGAGCGAAGAAGCAACAAGgtgagcccat ... ctgcaagcagGCAAAATGTGTTCCATAAGGAGCTTTGCTTTTGTGCTGGTATTAGCATTTT
EST: CAAAGCAGACAGAGAGCGAAGAAGCAACAAG GCAAAATGTGTTCCATAAGGAGCTTTGCTTTTGTGCTGGTATTAGCATTTTEST: gi|88580417|gb|CI697346.1|CI697346
genomic: CAAAGCAGACAGAGAGCGAAGAAGCAACAAGgtgagcccat ... ctgcaagcagGCAAAATGTGTTCCATAAGGAGCTTTGCTTTTGTGCTGGTATTAGCATTTT
EST: CTCCACCCCGTTCCAAGAACAAAGCAGACAGAGAGCGAAGAAGCAACAAG GCAAAATGTGTTCCATAAGGAGCTTTGCTTTTGTGCTGGTATTAGCATTTTEST: gi|88580670|gb|CI697614.1|CI697614
genomic: CTCCACCCCGTTCCAAGAACAAAGCAGACAGAGAGCGAAGAAGCAACAAGgtgagcccat ... ctgcaagcagGCAAAATGTGTTCCATAAGGAGCTTTGCTTTTGTGCTGGTATTAGCATTTT
EST: CTCCACCCCGTTCCAAGAACAAAGCAGACAGAGAGCGAAGAAGCAACAAG GCAAAATGTGTTCCATAAGGAGCTTTGCTTTTGTGCTGGTATTAGCATTTT
genomic: CTCCACCCCGTTCCAAGAACAAAGCAGACAGAGAGCGAAGAAGCAACAAGgtgagcccat ... ctgcaagcagGCAAAATGTGTTCCATAAGGAGCTTTGCTTTTGTGCTGGTATTAGCATTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTTAAAAAAATCAATAAGTTCAAGAAGATTCCCTTGCTCTCCTGACTTCTCCACCCCGTTCCAAGAACAAAGCAGACAGAGAGCGAAGAAGCAACAAGgtgagcccatgcttgattccttgatccatattagcttattcttagcaaccactcgctgtttcttgattttctctgcccgattcgattccgtaaccatggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccactcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctgccc