1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CCCACTCAGCGTCCCAAGAGCACACGGATGTGCGGTTACATTGGACGGCAACGCATACCTCATTGGTGGTATCCAAAGCAGTGAAGAATACGTTGAAACTgtgagttctttcccaagatcactctctccatcatccattgctgttgcttcaactcgccgaactctcacatccttctctcgttttattttgttttgttttttatttcacag
species | Oryza sativa |
transcript | LOC_Os01g07140.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CAGTGAAGAATACGTTGAAACT GTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCAEST: gi|87013903|gb|CI271294.1|CI271294
genomic: CAGTGAAGAATACGTTGAAACTgtgagttctt ... tatttcacagGTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCA
EST: ACGCATACCTCATTGGTGGTATCCAAAGCAGTGAAGAATACGTTGAAACT GTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCAEST: gi|86827243|gb|CI270916.1|CI270916
genomic: ACGCATACCTCATTGGTGGTATCCAAAGCAGTGAAGAATACGTTGAAACTgtgagttctt ... tatttcacagGTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCA
EST: ACGCATACCTCATTGGTGGTATCCAAAGCAGTGAAGAATACGTTGAAACT GTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCAEST: gi|88529458|gb|CI457775.1|CI457775
genomic: ACGCATACCTCATTGGTGGTATCCAAAGCAGTGAAGAATACGTTGAAACTgtgagttctt ... tatttcacagGTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCA
EST: AATACGTTGAAACT GTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCAEST: gi|8956551|gb|BE230466.1|BE230466
genomic: AATACGTTGAAACTgtgagttctt ... tatttcacagGTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCA
EST: ACGCATACCTCATTGGTGGTATCCAAAGCAGTGAAGAATACGTTGAAACT GTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCAEST: gi|86502513|gb|CI145146.1|CI145146
genomic: ACGCATACCTCATTGGTGGTATCCAAAGCAGTGAAGAATACGTTGAAACTgtgagttctt ... tatttcacagGTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCA
EST: ACGCATACCTCATTGGTGGTATCCAAAGCAGTGAAGAATACGTTGAAACT GTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCAEST: gi|33809643|gb|CF330713.1|CF330713
genomic: ACGCATACCTCATTGGTGGTATCCAAAGCAGTGAAGAATACGTTGAAACTgtgagttctt ... tatttcacagGTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCA
EST: ACGCATACCTCATTGGTGGTATCCAAAGCAGTGAAGAATACGTTGAAACT GTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCA
genomic: ACGCATACCTCATTGGTGGTATCCAAAGCAGTGAAGAATACGTTGAAACTgtgagttctt ... tatttcacagGTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCACTCAGCGTCCCAAGAGCACACGGATGTGCGGTTACATTGGACGGCAACGCATACCTCATTGGTGGTATCCAAAGCAGTGAAGAATACGTTGAAACTgtgagttctttcccaagatcactctctccatcatccattgctgttgcttcaactcgccgaactctcacatccttctctcgttttattttgttttgttttttatttcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA