1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCAATCCAGGTCAACAGAAGGCTAAGGTTTCTGAACTACCAAAATTCGGAAGACCGgtacgtatggatgacctctaatagctacatgcaaattaatttgtcatatgacctctaagaccagtaccgtactgacacaaaaggattgatttgacgcatt...
species | Oryza sativa |
transcript | LOC_Os01g05070.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGGTTTCTGAACTACCGAAATTCGGAAGACCG GCAAAGTTGCGGAGTTCTTCGTGGTGGTCGCGATACTTTATCCAGACTGGCEST: gi|27546786|gb|CA767261.2|CA767261
genomic: AGGTTTCTGAACTACCAAAATTCGGAAGACCGgtacgtatgg ... tttttcacagGCAAAGTTGCGGAGTTCTTCGTGGTGGTCGCGATACTTTATCCAGACTGGC
EST: CAGGTCAACAGAAGGCTAAGGTTTCTGAACTACCAAAATTCGGAAGACCG GCAAAGTTGCGGAGTTCTTCGTGGTGGTCGCGATACTTTATCCAGACTGGCEST: gi|88990961|gb|CI108348.1|CI108348
genomic: CAGGTCAACAGAAGGCTAAGGTTTCTGAACTACCAAAATTCGGAAGACCGgtacgtatgg ... tttttcacagGCAAAGTTGCGGAGTTCTTCGTGGTGGTCGCGATACTTTATCCAGACTGGC
EST: CTAAGGTTTCTGAACTACCAAAATTCGGAAGACCG GCAAAGTTGCGGAGTTCTTCGTGGTGTTCTCGATACTTTATCCAGACTGGCEST: gi|86496195|gb|CI138828.1|CI138828
genomic: CTAAGGTTTCTGAACTACCAAAATTCGGAAGACCGgtacgtatgg ... tttttcacagGCAAAGTTGCGGAGTTCTTCGTGGTGGTCGCGATACTTTATCCAGACTGGC
EST: CAGGTCAACAGAAGGCTAAGGTTTCTGAACTACCAAAATTCGGAAGACCG GCAAAGTTGCGGAGTTCTTCGTGGTGGTCGCGATACTTTATCCAGACTGGCEST: gi|88967189|gb|CI392145.1|CI392145
genomic: CAGGTCAACAGAAGGCTAAGGTTTCTGAACTACCAAAATTCGGAAGACCGgtacgtatgg ... tttttcacagGCAAAGTTGCGGAGTTCTTCGTGGTGGTCGCGATACTTTATCCAGACTGGC
EST: CTGAACTACCAAAATTC-GAAGACCG GCAAAGGTTGCGGAGTTCTTCGTGGTGGTCGCGATACTTTATCCAGACTGGEST: gi|88588825|gb|CI706667.1|CI706667
genomic: CTGAACTACCAAAATTCGGAAGACCGgtacgtatgg ... tttttcacagGCAAA-GTTGCGGAGTTCTTCGTGGTGGTCGCGATACTTTATCCAGACTGG
EST: CAGGTCAACAGAAGGCTAAGGTTCCTGAACTACCAAAATTCGGAAGACCG GCAAAGTTGCGGAGTCCTTCGTGGTGGTCGCGATACTTTATCCAGACTGGCEST: gi|58586280|gb|CF984588.1|CF984588
genomic: CAGGTCAACAGAAGGCTAAGGTTTCTGAACTACCAAAATTCGGAAGACCGgtacgtatgg ... tttttcacagGCAAAGTTGCGGAGTTCTTCGTGGTGGTCGCGATACTTTATCCAGACTGGC
EST: CAGGTCAACAGAAGGCTAAGGTTTCTGAACTACCAAAATTCGGAAGACCG GCAAAGTTGCGGAGTTCTTCGTGGTGGTCGCGATACTTTATCCAGACTGGCEST: gi|218478522|gb|FG957886.1|FG957886
genomic: CAGGTCAACAGAAGGCTAAGGTTTCTGAACTACCAAAATTCGGAAGACCGgtacgtatgg ... tttttcacagGCAAAGTTGCGGAGTTCTTCGTGGTGGTCGCGATACTTTATCCAGACTGGC
EST: CAGGTCAACAGAAGGCTAAGGTTTCTGAACTACCANAATTCGGAAGACCG GCAAAGTTGCGGAGTTCTTCGTGGTGGTCGCGATACTTTATCCAGACTGGCEST: gi|25803803|gb|CA759764.1|CA759764
genomic: CAGGTCAACAGAAGGCTAAGGTTTCTGAACTACCAAAATTCGGAAGACCGgtacgtatgg ... tttttcacagGCAAAGTTGCGGAGTTCTTCGTGGTGGTCGCGATACTTTATCCAGACTGGC
EST: CAGGTCAACAGAAGGCTAAGGTTTCTGAACTACCAAAATTCGGAAGACCG GCAAAGTTGCGGAGTTCTTCGTGGTGGTCGCGATACTTTATCCAGACTGGCEST: gi|58674474|gb|CK063161.1|CK063161
genomic: CAGGTCAACAGAAGGCTAAGGTTTCTGAACTACCAAAATTCGGAAGACCGgtacgtatgg ... tttttcacagGCAAAGTTGCGGAGTTCTTCGTGGTGGTCGCGATACTTTATCCAGACTGGC
EST: CAGGTCAACAGAAGGCTAAGGTTTCTGAACTACCAAAATTCGGAAGACCG GCAAAGTTGCGGAGTTCTTEST: gi|88262627|gb|CI366401.1|CI366401
genomic: CAGGTCAACAGAAGGCTAAGGTTTCTGAACTACCAAAATTCGGAAGACCGgtacgtatgg ... tttttcacagGCAAAGTTGCGGAGTTCTT
EST: GGTCAACAGGAAGGGTAAGGTTTGTGAAGCTACCAAAATTCGTAAGACCG GCAAAGTTGCGGAGTTCTTCGTGGTGGTCGCGATACTTTATCCAGACTGGGEST: gi|300215765|gb|HO088391.1|HO088391
genomic: GGTCAACA-GAAGGCTAAGGTTTCTGAA-CTACCAAAATTCGGAAGACCGgtacgtatgg ... tttttcacagGCAAAGTTGCGGAGTTCTTCGTGGTGGTCGCGATACTTTATCCAGACTGGC
EST: CAGGTCAACAAAAGGCTAAGGTTTCTGAACTACCAAAATTCGGAAGACCG GCAAAGTTGCGGAGTTCTTCGTGGTGGTCGCGATACTTTATCCAAACTGGC
genomic: CAGGTCAACAGAAGGCTAAGGTTTCTGAACTACCAAAATTCGGAAGACCGgtacgtatgg ... tttttcacagGCAAAGTTGCGGAGTTCTTCGTGGTGGTCGCGATACTTTATCCAGACTGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAATCCAGGTCAACAGAAGGCTAAGGTTTCTGAACTACCAAAATTCGGAAGACCGgtacgtatggatgacctctaatagctacatgcaaattaatttgtcatatgacctctaagaccagtaccgtactgacacaaaaggattgatttgacgcatt
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