1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTACGTCGCCCTCGGCATCCTCTACGCCTACCTGCTCTACCTATCCTGGACTCCCGACACCCTACGCGCCATGTTCGCCAGCAAGTACTGGCTCCCCGAGgtcagtcaatcaatcagtgacaccactctgcactccatgatcactagcattctctcaacctttctcttctcctgcgcag
species | Oryza sativa |
transcript | LOC_Os01g03750.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTCCCGACACCCTACGCGCCATGTTCGCCAGCAAGTACTGGCTCCCCGAG TTGACGGGGATCGTCAGGATGTTCGCCAGCGAGATGACCGTCGCCTCCGCCEST: gi|88203577|gb|CI203426.1|CI203426
genomic: CTCCCGACACCCTACGCGCCATGTTCGCCAGCAAGTACTGGCTCCCCGAGgtcagtcaat ... tcctgcgcagTTGACGGGGATCGTCAGGATGTTCGCCAGCGAGATGACCGTCGCCTCCGCC
EST: CTCCCGACACCCTACGCGCCATGTTCGCCAGCAAGTACTGGCTCCCCGAG TTGACGGGGATCGTCAGGATGTTCGCCAGCGAGATGACCGTCGCCTCCGCCEST: gi|88209075|gb|CI208924.1|CI208924
genomic: CTCCCGACACCCTACGCGCCATGTTCGCCAGCAAGTACTGGCTCCCCGAGgtcagtcaat ... tcctgcgcagTTGACGGGGATCGTCAGGATGTTCGCCAGCGAGATGACCGTCGCCTCCGCC
EST: CTCCCGACACCCTACGCGCCATGTTCGCCAGCAAGTACTGGCTCCCCGAG TTGACGGGGATCGTCAGGATGTTCGCCAGCGAGATGACCGTCGCCTCCGCC
genomic: CTCCCGACACCCTACGCGCCATGTTCGCCAGCAAGTACTGGCTCCCCGAGgtcagtcaat ... tcctgcgcagTTGACGGGGATCGTCAGGATGTTCGCCAGCGAGATGACCGTCGCCTCCGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACGTCGCCCTCGGCATCCTCTACGCCTACCTGCTCTACCTATCCTGGACTCCCGACACCCTACGCGCCATGTTCGCCAGCAAGTACTGGCTCCCCGAGgtcagtcaatcaatcagtgacaccactctgcactccatgatcactagcattctctcaacctttctcttctcctgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG