1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaatactaccattagcagtgccatttacgtttgatgcagagttaaacacttcagaaaatgtcctgaccacgggtttattgctcttgattgctgctgttgcagATGCATATTTCGGGAGCAGATTGCCGGTTGTGAATCTCAGGCTAGCGCAAGGCGGCGTCAGATTAGCTGCCACTCTGAACAGAATATTCAGTTAAAGGAA
species | Oryza sativa |
transcript | LOC_Os01g03740.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGCATGCGACTGGGCGTACAAGGACGTGACAGAAGATTCACTCCTGGAAG ATGCATATTTCGGGAGCAGATTGCCGGTTGTGAATCTCAGGCTAGCGCAAGEST: gi|86860435|gb|CI323386.1|CI323386
genomic: AGCATGCGACTGGGCGTACAAGGACGTGACAGAAGATTCACTCCTGGAAGgtaatactac ... gctgttgcagATGCATATTTCGGGAGCAGATTGCCGGTTGTGAATCTCAGGCTAGCGCAAG
EST: TACAAGGAAGTGACAGAAGATTCACTACCTGGAAG ATGCATATTTCGGGAGCAGATTGCCGGTTGTGAATCTCAGGGTAGCGCAA
genomic: TACAAGGACGTGACAGAAGATTCACT-CCTGGAAGgtaatactac ... gctgttgcagATGCATATTTCGGGAGCAGATTGCCGGTTGTGAATCTCAGGCTAGCGCAA
acttcagaaaatgtcctgaccacgggtttattgctcttgattgctgctgttgcagATGCATATTTCGGGAGCAGATTGCCGGTTGTGAATCTCAGGCTAGCGCAAGGCGGCGTCAGATTAGCTGCCACTCTGAACAGAATATTCAGTTAAAGGAA
tttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatactaccattagcagtgccatttacgtttgatgcagagttaaacacttcagaaaatgtcctgaccacgggtttattgctcttgattgctgctgttgcagATGCATATTTCGGGAGCAGATTGCCGGTTGTGAATCTCAGGCTAGCGCAAGGCGGCGTCAGATTAGCTGCCACTCTGAACAGAATATTCAGTTAAAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA