1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttttgtgtagtatggtactctctccgtctccaaaatcccttgtattttaggaccagtaactgaaagattcgtaaaagagaagataaaatacttctgcagGGAACCAGATCCTCTGACGTCAGAGGGACGTCCAACGGCTCTGCTCCGTCCATTCGGCATCGGACGGAGTCGAGCGAGCACAGCGGATAGGCTCGGCCCA
species | Oryza sativa |
transcript | LOC_Os01g03260.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
ttttaggaccagtaactgaaagattcgtaaaagagaagataaaatacttctgcagGGAACCAGATCCTCTGACGTCAGAGGGACGTCCAACGGCTCTGCTCCGTCCATTCGGCATCGGACGGAGTCGAGCGAGCACAGCGGATAGGCTCGGCCCA
cagtaac putative branch site (score: 2)
tacttct putative PPT
aagataaaatactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttgtgtagtatggtactctctccgtctccaaaatcccttgtattttaggaccagtaactgaaagattcgtaaaagagaagataaaatacttctgcagGGAACCAGATCCTCTGACGTCAGAGGGACGTCCAACGGCTCTGCTCCGTCCATTCGGCATCGGACGGAGTCGAGCGAGCACAGCGGATAGGCTCGGCCCA
- - - - - - -tggtact
- - - - - - - - - - - - - - -tccaaaa
- - - - - - - - - - - - - - - - - - - -cttgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagataaa