1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cactcaatagttcctagtacatgattaaatccccagtaaaatcagccatagaagtatactggccaattctatctctgaatttttttcccttctgttccagCAGTTTCAGAGAGTGAAGTTCCAAAGCCTAAGAGTAAGATAAGTTGTGATGATAAGAGTAAAGATGAAGGCTTCCCTTATGCAAGGCCAATCGTCTGCCA
species | Oryza sativa |
transcript | LOC_Os01g02910.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGATCCCCCTCCTGNAAAGGAAGAATCTTTGACAAAATCACCACAGACAG CAGTTTCAGAGAGTGAAGTTCCAAAGCCTAAGAGTAAGATAAGEST: gi|58658097|gb|CK046777.1|CK046777
genomic: TGATCCCCCTCCTGGAAAGGAAGAATCTTTGACAAAATCACCACAGACAGgttagagtta ... tctgttccagCAGTTTCAGAGAGTGAAGTTCCAAAGCCTAAGAGTAAGATAAG
EST: GATCCCCCGCCGTGGAAAGGAAGAATCTTTGACAAAATCACCACAGACAG CAGTTTCAGAGAGTGAAGTTCCAAAGCCTAAGAGTAAGATAAGTTGTGATG
genomic: GATCCCCCTCC-TGGAAAGGAAGAATCTTTGACAAAATCACCACAGACAGgttagagtta ... tctgttccagCAGTTTCAGAGAGTGAAGTTCCAAAGCCTAAGAGTAAGATAAGTTGTGATG
ccatagaagtatactggccaattctatctctgaatttttttcccttctgttccagCAGTTTCAGAGAGTGAAGTTCCAAAGCCTAAGAGTAAGATAAGTTGTGATGATAAGAGTAAAGATGAAGGCTTCCCTTATGCAAGGCCAATCGTCTGCCA
ttctatctctgaattt CT-rich tract
tgaattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactcaatagttcctagtacatgattaaatccccagtaaaatcagccatagaagtatactggccaattctatctctgaatttttttcccttctgttccagCAGTTTCAGAGAGTGAAGTTCCAAAGCCTAAGAGTAAGATAAGTTGTGATGATAAGAGTAAAGATGAAGGCTTCCCTTATGCAAGGCCAATCGTCTGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - gtacatg
- - - - - - - - - - - - - - - - - agtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tactggc