1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTTCCGTCCGTGGAGCGGCATCGATCTCGTCAGGTGAGCCGCGTGAGCGATGTCGAGGGACTACAGACGCCGGCGGCTTCGGAGGAGGGGGCGAGAAGGAgtaaattgctcagccgcacatgcttgctctccccaaaactggccatctatctagcctgtctcacccatccctttcttcctggcatttgcag
species | Oryza sativa |
transcript | LOC_Os01g02490.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGTCGAGGGACTACAGACGCCGGCGGCTTCGGAGGAGGGGGCGAGAAGGA GATGCAAGATCGAGACACATCTGATTGCTGGAGAGTCCAAACACATCTGATEST: gi|88346068|gb|CI633941.1|CI633941
genomic: TGTCGAGGGACTACAGACGCCGGCGGCTTCGGAGGAGGGGGCGAGAAGGAgtaaattgct ... gcatttgcagGATGCAAGATCGAGACACATCTGATTGCTGGAGAGTCCAAACACATCTGAT
EST: TGTCGAGGGACTACAGACGCCGGCGGCTTCGGAGGAGGGGGCGAGAAGGA GATGCAAGATCGAGACACATCTGATTGCTGGAGAGTCCAAACACATCTGATEST: gi|88290353|gb|CI665142.1|CI665142
genomic: TGTCGAGGGACTACAGACGCCGGCGGCTTCGGAGGAGGGGGCGAGAAGGAgtaaattgct ... gcatttgcagGATGCAAGATCGAGACACATCTGATTGCTGGAGAGTCCAAACACATCTGAT
EST: TGTCGAGGGACTACAGACGCCGGCGGCTTCGGAGGAGGGGGCGAGAAGGA GATGCAAGATCGAGACACATCTGATTGCTGGAGAGTCCAAACACATCTGATEST: gi|88339788|gb|CI649045.1|CI649045
genomic: TGTCGAGGGACTACAGACGCCGGCGGCTTCGGAGGAGGGGGCGAGAAGGAgtaaattgct ... gcatttgcagGATGCAAGATCGAGACACATCTGATTGCTGGAGAGTCCAAACACATCTGAT
EST: TGTCGAGGGACTACAGACGCCGGCGGCTTCGGAGGAGGGGGCGAGAAGGA GATGCAAGATCGAGACACATCTGATTGCTGGAGAGTCCACACACATCTGAT
genomic: TGTCGAGGGACTACAGACGCCGGCGGCTTCGGAGGAGGGGGCGAGAAGGAgtaaattgct ... gcatttgcagGATGCAAGATCGAGACACATCTGATTGCTGGAGAGTCCAAACACATCTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCCGTCCGTGGAGCGGCATCGATCTCGTCAGGTGAGCCGCGTGAGCGATGTCGAGGGACTACAGACGCCGGCGGCTTCGGAGGAGGGGGCGAGAAGGAgtaaattgctcagccgcacatgcttgctctccccaaaactggccatctatctagcctgtctcacccatccctttcttcctggcatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG