1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tattactgatggacactttcactgcttgaagtatgttgattgaaatatgaaattgagagaatcctgaaattgacaaaaaaacactttggttgagttgcagCAGGAGACAAAGCAAACAGCCTGCCAGCGGGCGTCACAGGTGGAGGTGGTGGCCAGAGAGCGTCGTAGGCAGATGTTGATGGAGCTGAACTCACATTGCA
species | Oryza sativa |
transcript | LOC_Os01g01170.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATCTGCTGGCCAA CAGGAGACAAAGCAAACAGCCTGCCAGCGGGCGTCACAGGTGGAGGTGGTGEST: gi|88272989|gb|CI388445.1|CI388445
genomic: ATCTGCTGGCCAAgtaagtgtga ... tgagttgcagCAGGAGACAAAGCAAACAGCCTGCCAGCGGGCGTCACAGGTGGAGGTGGTG
EST: GAGAAATCTGGCTGGCCAA CAGGAGACAAATCAAACAGCCTGCCAGCGGGCGTCACAGGTGGAGGTGGT
genomic: GAGAAATCT-GCTGGCCAAgtaagtgtga ... tgagttgcagCAGGAGACAAAGCAAACAGCCTGCCAGCGGGCGTCACAGGTGGAGGTGGT
tatgaaattgagagaatcctgaaattgacaaaaaaacactttggttgagttgcagCAGGAGACAAAGCAAACAGCCTGCCAGCGGGCGTCACAGGTGGAGGTGGTGGCCAGAGAGCGTCGTAGGCAGATGTTGATGGAGCTGAACTCACATTGCA
aattgac putative branch site (score: 1)
aaattgacaaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattactgatggacactttcactgcttgaagtatgttgattgaaatatgaaattgagagaatcctgaaattgacaaaaaaacactttggttgagttgcagCAGGAGACAAAGCAAACAGCCTGCCAGCGGGCGTCACAGGTGGAGGTGGTGGCCAGAGAGCGTCGTAGGCAGATGTTGATGGAGCTGAACTCACATTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - -ctgatgg
- - - - - - - - - - -ctgcttg
- - - - - - - - - - - - - - - - atgttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaaa