1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gagtatatgagattgtcttctatatgcaatttacttcatatcgacatttttctgcagaattgcaaaactgacgccttgttttccatctggaattgtgcagGGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGTTTTGATAATGATGGAAAGGTCATAGGTTTCCGTAAAGCCCTAAAATTCATTGTCTTAGGG
species | Oryza sativa |
transcript | LOC_Os01g01010.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCCGTTAAG GGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGTTCTGATAATGATEST: gi|88341250|gb|CI640007.1|CI640007
genomic: CCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCC-GTTAAGgttcgcctac ... aattgtgcagGGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGTTTTGATAATGAT
EST: CCCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCGTTAAG GGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGTTTTGATAATGATEST: gi|88851514|gb|CI670954.1|CI670954
genomic: CCCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCGTTAAGgttcgcctac ... aattgtgcagGGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGTTTTGATAATGAT
EST: CCCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCGTTAAG GGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGTTTTGATAATGATEST: gi|88308051|gb|CI647878.1|CI647878
genomic: CCCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCGTTAAGgttcgcctac ... aattgtgcagGGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGTTTTGATAATGAT
EST: CCCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCGTTAAG GGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGTTTTGATAATGATEST: gi|88571669|gb|CI663042.1|CI663042
genomic: CCCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCGTTAAGgttcgcctac ... aattgtgcagGGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGTTTTGATAATGAT
EST: CCCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCGTTAAG GGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGTTTTGATAATGATEST: gi|88324962|gb|CI644973.1|CI644973
genomic: CCCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCGTTAAGgttcgcctac ... aattgtgcagGGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGTTTTGATAATGAT
EST: CCCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCGTTAAG GGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGTTTTGATAATGATEST: gi|29675456|gb|CB671731.1|CB671731
genomic: CCCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCGTTAAGgttcgcctac ... aattgtgcagGGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGTTTTGATAATGAT
EST: CCCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCGTTAAG GGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGTTTTGATAATGATEST: gi|88307292|gb|CI641930.1|CI641930
genomic: CCCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCGTTAAGgttcgcctac ... aattgtgcagGGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGTTTTGATAATGAT
EST: CCCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCGTTAAG GGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGTTTTGATAATGAT
genomic: CCCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCGTTAAGgttcgcctac ... aattgtgcagGGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGTTTTGATAATGAT
atttttctgcagaattgcaaaactgacgccttgttttccatctggaattgtgcagGGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGTTTTGATAATGATGGAAAGGTCATAGGTTTCCGTAAAGCCCTAAAATTCATTGTCTTAGGG
aactgac putative branch site (score: 8)
ttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagtatatgagattgtcttctatatgcaatttacttcatatcgacatttttctgcagaattgcaaaactgacgccttgttttccatctggaattgtgcagGGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGTTTTGATAATGATGGAAAGGTCATAGGTTTCCGTAAAGCCCTAAAATTCATTGTCTTAGGG
- - - - - - - - - - -atatgca
- - - - - - - - - - - - - - - - - - - - - - - - tttctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aattgca