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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGTTGCCTGAAATATTTAGCTCTGCTGAAACATTTGATGAATGGTTTCAAATTTCTGGTGAAAATGATCAGCAGGAGGTTGTTCAACAGCTTCATAAGgtgagtaatataactcccatgctcaatggctcattatgctaataatttgggacaacctgcatagttcattcatgtaaattcttctatgaag

Basic information

species Oryza sativa
transcript 13113.m00246
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g27040.1 (Oryza sativa), 5'ss of exon 8
lower sequence: AC235535.1_FGT001 (Zea mays), 5'ss of exon 8
CTTGTTGCCTGAAATATTTAGCTCTGCTGAAACATTTGATGAATGGTTTCAAATTTCTGGTGAAAATGATCAGCAGGAGGTTGTTCAACAGCTTCATAAGgtgagtaatataactcccatgctcaatggctcattatgctaataatttgggacaacctgc--atagttcattcatgtaaattcttctatgaag
|||| | |||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||||||| || || ||||||||||||||  |  |||||| |  ||||    ||  || |||||   | || |||   |  | ||    ||| ||  ||| || || || | | | |   
CTTGCTCCCTGAAATATTTAGCTCTGCGGAAACCTTTGATGAATGGTTTCAAATTTCTGGGGAAAATGATCAACAGGAGGTGGTCCAGCAGCTTCATAAGgttgg-gatataattatcatg----ataactaattat---agtactttaaaatgaactcttaataattgtttcttgcaacttttgcaaag---

upper sequence: LOC_Os01g27040.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G010085_T01 (Zea mays), 5'ss of exon 5
CTTGTTGCCTGAAATATTTAGCTCTGCTGAAACATTTGATGAATGGTTTCAAATTTCTGGTGAAAATGATCAGCAGGAGGTTGTTCAACAGCTTCATAAGgtgagtaatataactcccatgctcaatggctcattatgctaataatttgggacaa--cctgcatagttcattcatgtaaattcttctatgaag
|||| | |||||||||||||||||||| || || |||||||||||||||||||| ||||| ||||||||||| |||||||| || || ||||||||||||||  |  |||||  |  | || |||     |        || ||  ||   |  |   ||  ||| ||  |||  | || || | | | |   
CTTGCTACCTGAAATATTTAGCTCTGCGGAGACCTTTGATGAATGGTTTCAAATATCTGGGGAAAATGATCAACAGGAGGTGGTGCAGCAGCTTCATAAGgttgg-gatatagttttcgtgatcaccaattt-------tagtaccttaaaatgaactctttataattgtttctcgcaacttttgcaaag---

upper sequence: LOC_Os01g27040.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 8
CTTGTTGCCTGAAATATTTAGCTCTGCTGAAACATTTGATGAATGGTTTCAAATTTCTGGTGAAAATGATCAGCAGGAGGTTGTTCAACAGCTTCATAAGgtgagtaatataactcccatgctcaat---ggctcattatgctaataatttgggacaacctgcatagttcattcatgtaaattcttctatgaag
  | ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||  | || |||||||||||||| || || ||||| ||   |  | || |  || |   |   ||   | | || ||| ||| |   | ||      |  |  |||  |||  ||  ||        
TCTTTTGCCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACATGAGGTTGTTCAACAACTACACAAGgtaagccttgaagcttctttgattgtttagggtctactgtgataa-aatgttatataata-atgttttcaatttctgtgcatgattaag-----

upper sequence: LOC_Os01g27040.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA13G28720.1 (Glycine max), 5'ss of exon 8
CTTGTTGCCTGAAATATTTAGCTCTGCTGAAACATTTGATGAATGGTTTCAAATTTCTGGTGAAAATGATCAGCAGGAGGTTGTTCAACAGCTTCATAAGgtgagtaatataac--tcccatgctcaatggctcattatgctaataatttgggaca-acctgcatagttcattcatgtaaattcttctatgaag
  |  |||| ||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||||| || |||||||||||||||||  | || ||||| | | | | |||  ||   || |   |||       |  |  |||| ||| ||| |  ||     ||||||  | ||  |   || |     
TCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACACAAGgtaaattacagaaccttcttttgattgttggaagtccttaatgttaatctggcacataattgtcattttcattt-tctatgtatatcaag----

upper sequence: LOC_Os01g27040.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA17G02640.1 (Glycine max), 5'ss of exon 8
CTTGTTGCCTGAAATATTTAGCTCTGCTGAAACATTTGATGAATGGTTTCAAATTTCTGGTGAAAATGATCAGCAGGAGGTTGTTCAACAGCTTCATAAGgtgagtaatataactcc--catgctcaatggctcattatgctaataatttgggacaacctgcatagttcattcatgtaaattcttctatgaag
  | ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||  | || |||||||||||||| || || ||||| ||   |  | || |  |||  | || ||   ||| || ||| ||| | | | ||      || |   ||||| |    | |   || |||
TCTTTTGCCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACATGAGGTTGTTCAACAACTACACAAGgtaagccttgaagcttcttcattgttaagggtctattgtgataa-aatgttgtataa------taatgttttcattttctgtgtgtaattaag

upper sequence: LOC_Os01g27040.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA15G10370.1 (Glycine max), 5'ss of exon 8
CTTGTTGCCTGAAATATTTAGCTCTGCTGAAACATTTGATGAATGGTTTCAAATTTCTGGTGAAAATGATCAGCAGGAGGTTGTTCAACAGCTTCATAAGgtgagtaatataac--tcccatgctcaatggctcattatgctaataatttgggaca-acctgcatagttcattcatgtaaattcttctatgaag
  |  |||| ||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||  | || ||||| | | | | |||  ||   || |   |||       || |  |||| ||| ||| |  ||     ||||||  | ||  |   || |     
TCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGATCAACAGGAGGTTGTTCAACAATTACACAAGgtaaattacagaaccttcttttgattgttggaagtccttgatgttaatctggcacataattgtcattttcattt-tctatgtatatcaag----

upper sequence: LOC_Os01g27040.1 (Oryza sativa), 5'ss of exon 8
lower sequence: AT5G18620.1 (Arabidopsis thaliana), 5'ss of exon 8
CTTGTTGCCTGAAATATTTAGCTCTGCTGAAACATTTGATGAATGGTTTCAAATTTCTGGTGAAAATGATCAGCAGGAGGTTGTTCAACAGCTTCATAAGgtgagtaatataactcccatgctcaatggctcattatgctaataatttgggacaacctgcatagttcattcatgtaaattcttctatgaag
  |  | |||||  | ||||| || || ||||| ||||| || ||||||||||||||||||||||| || ||||| || ||||||||||| ||||| |||||  |||      |||  ||  |     | | ||| | ||||    ||  |  || |    ||  ||||   ||||               
TCTTCTCCCTGAGGTTTTTAGTTCAGCAGAAACTTTTGACGAGTGGTTTCAAATTTCTGGTGAAAACGACCAGCAAGAAGTTGTTCAACAACTTCACAAGgtatgta------ctcatattttatcaaggttattct-ctaagttcttatgctaatc-atttacctcatctttgtag--------------

upper sequence: LOC_Os01g27040.1 (Oryza sativa), 5'ss of exon 8
lower sequence: AT3G06400.1 (Arabidopsis thaliana), 5'ss of exon 8
CTTGTTGCCTGAAATATTTAGCTCTGCTGAAACATTTGATGAATGGTTTCAAATTTCTGGTGAAAATGATCAGCAGGAGGTTGTTCAACAGCTTCATAAGgtgagtaatataactcccatgctcaatggctcattatgctaataatttgggacaacctgcatagttcattcatgtaaattcttctatgaag
  |  ||||||| || ||||| || || || || ||||||||||||||||||||||||||||| ||||| ||||| || ||||| ||||| || || |||||  |  ||  | |         || ||  |  |||| ||  |   |  |        |   | | | ||||||||  || ||        
TCTTCTGCCTGAGATTTTTAGTTCAGCAGAGACTTTTGATGAATGGTTTCAAATTTCTGGTGAGAATGACCAGCAAGAAGTTGTGCAACAACTGCACAAGgtatg-gatgcacccattccttgcattgagt--ttattctgttctgtgtgagtcgtaggttaattgctttcatgtatctttttag------

upper sequence: LOC_Os01g27040.1 (Oryza sativa), 5'ss of exon 8
lower sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 8
CTTGTTGCCTGAAATATTTAGCTCTGCTGAAACATTTGATGAATGGTTTCAAATTTCTGGTGAAAATGATCAGCAGGAGGTTGTTCAACAGCTTCATAAGgtgagtaatataactcccatgctcaatggctcattatgctaataatttgggacaacctgcatagttcattcatgtaaattcttctatgaag
  |  |||| || |||||||  || ||||| || |||||||||||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||||| |     | | |||| |   |   | ||||  ||   || |   |       ||    || |||  |  || |   || ||        
TCTACTGCCCGAGATATTTAATTCAGCTGAGACTTTTGATGAATGGTTCCAAATTTCTGGAGATAATGACCAGCAGGAGGTTGTTCAACAGCTTCATAAGgtaaacccaagacctccta-attttttagctc--taccttatttcatctcatttactgaaatggtttctgtatttctgttttttag-----

upper sequence: LOC_Os01g27040.1 (Oryza sativa), 5'ss of exon 8
lower sequence: EFJ31365 (Selaginella moellendorffii), 5'ss of exon 8
CTTGTTGCCTGAAATATTTAGCTCTGCTGAAACATTTGATGAATGGTTTCAAATTTCTGGTGAAAATGATCAGCAGGAGGTTGTTCAACAGCTTCATAAGgtgagtaatataactcccatgctcaatggctcattatgctaataatttgggacaacctgcatagttcattcatgtaaattcttctatgaag
  |  |||| ||||| |||||||||||||| || ||||| || |||||||| |||||||| ||||||||||||||||||||  |||| || ||||| ||||| | | ||  | |    ||    |||    ||| |   ||| | |||    ||                                     
TCTCCTGCCCGAAATCTTTAGCTCTGCTGAGACCTTTGACGAGTGGTTTCAGATTTCTGGAGAAAATGATCAGCAGGAGGTCATTCAGCAACTTCACAAGgt-acttatccagcatttata---aatcaaccatgag--taacactttttctcag------------------------------------

upper sequence: LOC_Os01g27040.1 (Oryza sativa), 5'ss of exon 8
lower sequence: EFJ32950 (Selaginella moellendorffii), 5'ss of exon 7
CTTGTTGCCTGAAATATTTAGCTCTGCTGAAACATTTGATGAATGGTTTCAAATTTCTGGTGAAAATGATCAGCAGGAGGTTGTTCAACAGCTTCATAAGgtgagtaatataactcccatgctcaatggctcattatgctaataatttgggacaacctgcatagttcattcatgtaaattcttctatgaag
  || |||| || || || ||||||||||||||||| || |||||||||||||| ||||| ||||| || ||||| || ||||| || |||||||| |||||  | |   | |   | |||| | || |   ||  || |||| ||||                                           
TCTGCTGCCGGAGATTTTCAGCTCTGCTGAAACATTCGACGAATGGTTTCAAATATCTGGCGAAAACGACCAGCAAGAAGTTGTGCAGCAGCTTCACAAGgtatgaa---tgagcgctatgcgctatcgtcgatgctgataatgatttacag---------------------------------------

upper sequence: LOC_Os01g27040.1 (Oryza sativa), 5'ss of exon 8
lower sequence: EFJ15818 (Selaginella moellendorffii), 5'ss of exon 7
CTTGTTGCCTGAAATATTTAGCTCTGCTGAAACATTTGATGAATGGTTTCAAATTTCTGGTGAAAATGATCAGCAGGAGGTTGTTCAACAGCTTCATAAGgtgagtaatataactcccatgctcaatggctcattatgctaataatttgggacaacctgcatagttcattcatgtaaattcttctatgaag
  || |||| || || || ||||||||||||||||| || |||||||||||||| ||||| ||||| || ||||| || ||||| || |||||||| |||||  | |   | |   | |||| | || |   ||  || |||| ||||   |                                       
TCTGCTGCCGGAGATTTTCAGCTCTGCTGAAACATTCGACGAATGGTTTCAAATATCTGGCGAAAACGACCAGCAAGAAGTTGTGCAGCAGCTTCACAAGgtatgaa---tgagcgctatgcgctatcgtcgatgctgataatgattttacag--------------------------------------