1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaagaacatgtcctgcattctgttgatcactgatccatcgatgttgccacagttggttgaacagatttgtgcctctgctctgcagGTCTCCGGTACAATGCTCTCAGCTTCATCTTCGTTCAGGTGAGGGAGCTGTCGTTCTTGGAGTGGCACCCGTTCAGTGTGTCTTCGAGCCCCATGGATGG
species | Oryza sativa |
transcript | 13113.m00231 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCATGCCGCCCTTGCGGAACCGTGGAACTAGTCTTCTCAAAGCCAGCAA GTCTCCGGTACAATGCTCTCAGCTTCATCTTCGTTCAGGTGAGGGAGCTGTEST: gi|29663836|gb|CB660111.1|CB660111
genomic: CTCATGCCGCCCTTGCGGAACCGTGGAACTAGTCTTCTCAAAGCCAGCAAgtaaagaaca ... tgctctgcagGTCTCCGGTACAATGCTCTCAGCTTCATCTTCGTTCAGGTGAGGGAGCTGT
EST: CTCATGCCGCCCTTGCGGAACCGTGGAACTAGTCTTCTCAAAGCCAGCAA GTCTCCGGTACAATGCTCTCAGCTTCATCTTCGTTCAGGTGAGGGAGCTGTEST: gi|58655117|gb|CK043797.1|CK043797
genomic: CTCATGCCGCCCTTGCGGAACCGTGGAACTAGTCTTCTCAAAGCCAGCAAgtaaagaaca ... tgctctgcagGTCTCCGGTACAATGCTCTCAGCTTCATCTTCGTTCAGGTGAGGGAGCTGT
EST: CTCATGCCGCCCTTGCGGAACCGTGGAACTAGTCTTCTCAAAGCCAGCAA GTCTCCGGTACAATGCTCTCAGCTTCATCTTCGTTCAGGTGAGGGAGCTGTEST: gi|25798304|gb|CA754265.1|CA754265
genomic: CTCATGCCGCCCTTGCGGAACCGTGGAACTAGTCTTCTCAAAGCCAGCAAgtaaagaaca ... tgctctgcagGTCTCCGGTACAATGCTCTCAGCTTCATCTTCGTTCAGGTGAGGGAGCTGT
EST: CTCATGCCGCCCTTGCGGAACCGTGGAACTAGTCTTCTCAAAGCCAGCAA GTCTCCGGTACAATGCTCTCAGCTTCATCTTCGTTCAGGTGAGGGAGCTGT
genomic: CTCATGCCGCCCTTGCGGAACCGTGGAACTAGTCTTCTCAAAGCCAGCAAgtaaagaaca ... tgctctgcagGTCTCCGGTACAATGCTCTCAGCTTCATCTTCGTTCAGGTGAGGGAGCTGT
tgatccatcgatgttgccacagttggttgaacagatttgtgcctctgctctgcagGTCTCCGGTACAATGCTCTCAGCTTCATCTTCGTTCAGGTGAGGGAGCTGTCGTTCTTGGAGTGGCACCCGTTCAGTGTGTCTTCGAGCCCCATGGATGG
cactgat putative branch site (score: 68)
cctctgctct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagaacatgtcctgcattctgttgatcactgatccatcgatgttgccacagttggttgaacagatttgtgcctctgctctgcagGTCTCCGGTACAATGCTCTCAGCTTCATCTTCGTTCAGGTGAGGGAGCTGTCGTTCTTGGAGTGGCACCCGTTCAGTGTGTCTTCGAGCCCCATGGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA