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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcacaaataaccgtagtttaggttttgatccttatgctcataattctagacatcttcctgttgtgttagGTGTTGGTGCTAGAAGAT

Basic information

species Oryza sativa
transcript 13113.m00134
intron # 4
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtttaggttttgatccttatgctcataattctagacatcttcctgttgtgttagGTGTTGGTGCTAGAAGAT
        ttttgat  putative branch site (score: 4)
                                      tcttcctgtt  putative PPT
                         ataattcta  TA-rich tract