1 5' 3' | 2 5' 3' | 3 5' 3' |
gtagccctctaatctttgcttgtctttattagtttggcatgcattaacttatgcatacataactatggggggtggtaatggtagttttatttgtttgagcagGCACGTCCACTGTTCAGTGACCGCAGGAAGTTTCCAAAGTTAGCAGATCCACAGCTGCAGGGACGGTATCCCATGCGGGGTCTTTACCAAGCTCTAGCTG
species | Glycine max |
transcript | GLYMA20G39370.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGCCATTGACAGCACTCGACCCCATGGAGAACAAAACCTTGTCACATGG GCACGTCCACTGTTCAATGACCGCAGGAAGTTTCCAAAGTTAGCAGATCCAEST: gi|10843947|gb|BF067300.1|BF067300
genomic: AAGCCATTGACAGCACTCGACCCCATGGAGAACAAAACCTTGTCACATGGgtagccctct ... gtttgagcagGCACGTCCACTGTTCAGTGACCGCAGGAAGTTTCCAAAGTTAGCAGATCCA
EST: AAGCCATTGACAGCACTCGACCCCATGGAGAACAAAACCTTGTCACATGG GCACGTCCACTGTTCAATGACCGCAGGAAGTTTCCAAAGTTAGCAGATCCAEST: gi|208219560|gb|GE020616.1|GE020616
genomic: AAGCCATTGACAGCACTCGACCCCATGGAGAACAAAACCTTGTCACATGGgtagccctct ... gtttgagcagGCACGTCCACTGTTCAGTGACCGCAGGAAGTTTCCAAAGTTAGCAGATCCA
EST: AAGCCATTGACAGCACTCGACCCCATGGAGAACAAAACCTTGTCACATGG GCACGTCCACTGTTCAATGACCGCAGGAAGTTTCCAAAGTTAEST: gi|17021381|gb|BM092415.1|BM092415
genomic: AAGCCATTGACAGCACTCGACCCCATGGAGAACAAAACCTTGTCACATGGgtagccctct ... gtttgagcagGCACGTCCACTGTTCAGTGACCGCAGGAAGTTTCCAAAGTTA
EST: AAGCCATTGACAGCACTCGACCCCATGGAGAACAAAACCTTGTCACATGG GCACGTCCACTGTTCAGTGACCGCAGGAAGTTTCCAAAGTTAGCAGATCCA
genomic: AAGCCATTGACAGCACTCGACCCCATGGAGAACAAAACCTTGTCACATGGgtagccctct ... gtttgagcagGCACGTCCACTGTTCAGTGACCGCAGGAAGTTTCCAAAGTTAGCAGATCCA
cttatgcatacataactatggggggtggtaatggtagttttatttgtttgagcagGCACGTCCACTGTTCAGTGACCGCAGGAAGTTTCCAAAGTTAGCAGATCCACAGCTGCAGGGACGGTATCCCATGCGGGGTCTTTACCAAGCTCTAGCTG
acataac putative branch site (score: 3)
tttgttt putative PPT
tagttttatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagccctctaatctttgcttgtctttattagtttggcatgcattaacttatgcatacataactatggggggtggtaatggtagttttatttgtttgagcagGCACGTCCACTGTTCAGTGACCGCAGGAAGTTTCCAAAGTTAGCAGATCCACAGCTGCAGGGACGGTATCCCATGCGGGGTCTTTACCAAGCTCTAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT