1 5' 3' | 2 5' 3' | 3 5' 3' |
CCTTTGTACTGGAGAGAAGGGCTTTGGCTATAAGGGCTCCACCTTCCATCGTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttttgctttatgctttctcatcctccccattctccattctaacaacaatcatttccttcctcgcag
species | Glycine max |
transcript | GLYMA20G39340.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|208219392|gb|GE020182.1|GE020182
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|193308516|gb|FK276961.1|FK276961
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|209714759|gb|BW654109.1|BW654109
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|151399950|gb|EV269821.1|EV269821
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|193421466|gb|FK389625.1|FK389625
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: CAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|21678092|gb|BQ630443.1|BQ630443
genomic: CAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|151403840|gb|EV273650.1|EV273650
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|9899901|gb|BE608869.1|BE608869
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|151411656|gb|EV281467.1|EV281467
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|254337627|gb|GR849473.1|GR849473
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|209706049|gb|BW653378.1|BW653378
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|31473399|gb|CD415412.1|CD415412
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|15813997|gb|BI786272.1|BI786272
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGAATCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAAG-ATATATGGCCCG-ACTTTCAAAGATEST: gi|209706050|gb|BW653379.1|BW653379
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAA-GTATATATGGTC-GTACTTTCAAAGAT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|26268893|gb|CA819956.1|CA819956
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|23052950|gb|BU577441.1|BU577441
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|16284153|gb|BI945934.1|BI945934
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTNTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|20449160|gb|BQ253284.1|BQ253284
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAAGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|192300966|gb|FG993026.1|FG993026
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGAATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|192312057|gb|FK003848.1|FK003848
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCGTCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|16342966|gb|BI968561.1|BI968561
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACNNNGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|192312058|gb|FK003849.1|FK003849
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCGTCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|151403534|gb|EV273344.1|EV273344
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|209705904|gb|BW676009.1|BW676009
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: TCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|209726969|gb|BW675371.1|BW675371
genomic: TCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|193452050|gb|FK418456.1|FK418456
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|208198867|gb|GE000327.1|GE000327
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: TGTCATCAAGGATTTCATGATTCAAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTNTATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|17153970|gb|BM143903.1|BM143903
genomic: TGTCATCAAGGATTTCATGATTCAA-GGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|193361333|gb|FK328651.1|FK328651
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: CAAGGAGGTAGTACTTTTGTACAAAGG-AAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|151407379|gb|EV277194.1|EV277194
genomic: CAAGGAGG-AG-AC-TTTG-ACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|37995911|gb|CF807500.1|CF807500
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|214008657|gb|DB988234.1|DB988234
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTTAAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|192293856|gb|FG986065.1|FG986065
genomic: GATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|207827927|gb|GD798742.1|GD798742
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|16282175|gb|BI944876.1|BI944876
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|21889679|gb|BQ742892.1|BQ742892
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|31470145|gb|CD412173.1|CD412173
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|9899908|gb|BE608876.1|BE608876
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|213611995|gb|DB958949.1|DB958949
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTEST: gi|16281004|gb|BI944264.1|BI944264
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
EST: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAAT GGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
genomic: GTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttt ... ttcctcgcagGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTTTGTACTGGAGAGAAGGGCTTTGGCTATAAGGGCTCCACCTTCCATCGTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATgtatgttttttgctttatgctttctcatcctccccattctccattctaacaacaatcatttccttcctcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA