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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGCACACATACTCAAGCGAGGATGCAGCTCCGGAGGGTCCTCACTCCGATCTCTTTGTATATTACTGCAAACATTGCGGATCCCATGTCCTCATAACAGgtatgtgtgtgatgtgattattctgaatgaatgaatccctaatccctaatcccctcttgtctcgcag

Basic information

species Glycine max
transcript GLYMA20G39320.3
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G39320.3 (Glycine max), 5'ss of exon 1
lower sequence: AT5G63440.3 (Arabidopsis thaliana), 5'ss of exon 1
ACGCACACATACTCAAGCGAGGATGCAGCTCCGGAGGGTCCTCACTCCGATCTCTTTGTATATTACTGCAAACATTGCGGATCCCATGTCCTCATAACAGgtatgt-------gtgtgatgtgattattctgaatgaatgaatccctaatccctaatc---------ccctcttgtctcgcag-----------------
|| ||||| ||||| |||||||| || || ||||| || ||  |||| |||||||| ||||| ||||||||||| || || || |||||||| || || |||  ||        | | |  |  | |||| || |    |  |   |       |||          |||| ||   |   ||                 
ACACACACGTACTCGAGCGAGGACGCCGCGCCGGATGGACCCGACTCTGATCTCTTCGTATACTACTGCAAACACTGTGGTTCTCATGTCCTTATCACTGgttcgtttctccaatttcaccttttgattccgagtttggggtttagttgcgttaaattagagtgaaacccttttacttgcgagattgctctttggtttcc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192299668|gb|FG990021.1|FG990021
EST:     TCTCTTTGTATATTACTGCAAACATTGCGGATCCCATGTCCTCATAACAG                         ATACCCAATTGCAGAAAATGCCTAAAAGGAAAACCGCCAAAGCTTATGTAC
genomic: TCTCTTTGTATATTACTGCAAACATTGCGGATCCCATGTCCTCATAACAGgtatgtgtgt ... tgtctcgcagATACCCAATTGCAGAAAATGCCTAAAAGGAAAACCGACAAAGCTTATGTAC
EST: gi|15815879|gb|BI788154.1|BI788154
EST:     TCTCTTTGTATATTACTGCAAACATTGCGGATCCCATGTCCTCATAACAG                         ATACCCAATTGCAGAAAATGCCTAAAAGGAAAACCGACAAAGCTTATGTAC
genomic: TCTCTTTGTATATTACTGCAAACATTGCGGATCCCATGTCCTCATAACAGgtatgtgtgt ... tgtctcgcagATACCCAATTGCAGAAAATGCCTAAAAGGAAAACCGACAAAGCTTATGTAC
EST: gi|193699770|gb|FK641653.1|FK641653
EST:     TCTCTTTGTATATTACTGCAAACATTGCGGATCCCATGTCCTCATAACAG                         ATACCCAATTGCAGAAAATGCCTAAAAGGAAAACCGACAAAGCTTATGTAC
genomic: TCTCTTTGTATATTACTGCAAACATTGCGGATCCCATGTCCTCATAACAGgtatgtgtgt ... tgtctcgcagATACCCAATTGCAGAAAATGCCTAAAAGGAAAACCGACAAAGCTTATGTAC
EST: gi|213593083|gb|DB969881.1|DB969881
EST:     TCTCTTTGTATATTACTGCAAACATTGCGGATCCCATGTCCTCATAACAG                         ATACCCAATTGCAGAAAATGCCTAAAAGGAAAACCGACAAAGCTTATGTAC
genomic: TCTCTTTGTATATTACTGCAAACATTGCGGATCCCATGTCCTCATAACAGgtatgtgtgt ... tgtctcgcagATACCCAATTGCAGAAAATGCCTAAAAGGAAAACCGACAAAGCTTATGTAC
EST: gi|298181842|gb|HO026017.1|HO026017
EST:     TCTCTTTGTATATTACTGCAAACATTGCGGATCCCATGTCCTCATAACAG                         ATACCCAATTGCAGAAAATGCCTAAAAGGAAAACCGACAAAGCTTATGTAC
genomic: TCTCTTTGTATATTACTGCAAACATTGCGGATCCCATGTCCTCATAACAGgtatgtgtgt ... tgtctcgcagATACCCAATTGCAGAAAATGCCTAAAAGGAAAACCGACAAAGCTTATGTAC
EST: gi|193313069|gb|FK279626.1|FK279626
EST:     TCTCTTTGTATATTACTGCAAACATTGCGGATCCCATGTCCTCATAACAG                         ATACCCAATTGCAGAAAATGCCTAAAAGGAAAACCGACAAAGCTTATGTAC
genomic: TCTCTTTGTATATTACTGCAAACATTGCGGATCCCATGTCCTCATAACAGgtatgtgtgt ... tgtctcgcagATACCCAATTGCAGAAAATGCCTAAAAGGAAAACCGACAAAGCTTATGTAC
EST: gi|151399174|gb|EV269045.1|EV269045
EST:     TCTCTTTGTATATTACTGCAAACATTGCGGATCCCATGTCCTCATAACAG                         ATACCCAATTGCAGAAAATGCCTAAAAGGAAAACCGACAAAGCTTATGTAC
genomic: TCTCTTTGTATATTACTGCAAACATTGCGGATCCCATGTCCTCATAACAGgtatgtgtgt ... tgtctcgcagATACCCAATTGCAGAAAATGCCTAAAAGGAAAACCGACAAAGCTTATGTAC