Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58016410|gb|CX703152.1|CX703152EST: GTCAGATGACTCTTCAGCGAGGATGGAATAACAAGTCAAAGCTGCTTGTG GTAGAGGATTTGACTGCTAGACAAGTTTATGAGAAACTTTTGGAGGCTGTG
genomic: GTCAGATGACTCTTCAGCGAGGATGGAATAACAAGTCAAAGCTGCTTGTGgtcagttaca ... actgtttcagGTAGAGGATTTGACTGCTAGACAAGTTTATGAGAAACTTTTGGAGGCTGTG
EST:
gi|9439808|gb|BE440322.1|BE440322EST: GTCAGATGACTCTTCAGCGAGGATGGAATAACAAGTCAAAGCTGCTTGTG GTAGAGGATTTGACTGCTAGACAAGTTTATGAGAAACTTTTGGAGGCTGTG
genomic: GTCAGATGACTCTTCAGCGAGGATGGAATAACAAGTCAAAGCTGCTTGTGgtcagttaca ... actgtttcagGTAGAGGATTTGACTGCTAGACAAGTTTATGAGAAACTTTTGGAGGCTGTG
EST:
gi|208213033|gb|GE010524.1|GE010524EST: GTCAGATGACTCTTCAGCGAGGATGGAATAACAAGTCAAAGCTGCTTGTG GTAGAGGATTTGACTGCTAGACAAGTTTATGAGAAACTTTTGGAGGCTGTG
genomic: GTCAGATGACTCTTCAGCGAGGATGGAATAACAAGTCAAAGCTGCTTGTGgtcagttaca ... actgtttcagGTAGAGGATTTGACTGCTAGACAAGTTTATGAGAAACTTTTGGAGGCTGTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgccttcttctttccattttaactaattctcttttacatttcacgactgtttcagGTAGAGGATTTGACTGCTAGACAAGTTTATGAGAAACTTTTGGAGGCTGTGCAACCTTAGCTTTAGTATCCATGCTGTCCTTCCATAGCAAGCCAGGTTG
aactaat putative branch site (score: 2)
ctgtttc putative PPT
attttaactaattctc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcagttacattctaatcaatttcgccttcttctttccattttaactaattctcttttacatttcacgactgtttcagGTAGAGGATTTGACTGCTAGACAAGTTTATGAGAAACTTTTGGAGGCTGTGCAACCTTAGCTTTAGTATCCATGCTGTCCTTCCATAGCAAGCCAGGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG