Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151399174|gb|EV269045.1|EV269045EST: GTCAGATGACTCTTCAGCGAGGATGGAATAACAAGTCAAAGCTGCTTGTG GTAGAGGATTTGACTGCTAGACAAGTTTATGAGAAA
genomic: GTCAGATGACTCTTCAGCGAGGATGGAATAACAAGTCAAAGCTGCTTGTGgtcagttaca ... actgtttcagGTAGAGGATTTGACTGCTAGACAAGTTTATGAGAAA
EST:
gi|58016410|gb|CX703152.1|CX703152EST: GTCAGATGACTCTTCAGCGAGGATGGAATAACAAGTCAAAGCTGCTTGTG GTAGAGGATTTGACTGCTAGACAAGTTTATGAGAAACTTTTGGAGGCTGTG
genomic: GTCAGATGACTCTTCAGCGAGGATGGAATAACAAGTCAAAGCTGCTTGTGgtcagttaca ... actgtttcagGTAGAGGATTTGACTGCTAGACAAGTTTATGAGAAACTTTTGGAGGCTGTG
EST:
gi|9439808|gb|BE440322.1|BE440322EST: GTCAGATGACTCTTCAGCGAGGATGGAATAACAAGTCAAAGCTGCTTGTG GTAGAGGATTTGACTGCTAGACAAGTTTATGAGAAACTTTTGGAGGCTGTG
genomic: GTCAGATGACTCTTCAGCGAGGATGGAATAACAAGTCAAAGCTGCTTGTGgtcagttaca ... actgtttcagGTAGAGGATTTGACTGCTAGACAAGTTTATGAGAAACTTTTGGAGGCTGTG
EST:
gi|151412010|gb|EV281821.1|EV281821EST: GTCAGATGACTCTTCAGCGAGGATGGAATAACAAGTCAAAGCTGCTTGTG GTAGAGGATTTGACTGCTAGACAAGTTTATGAGAAACTTTTGGAGGCTGTG
genomic: GTCAGATGACTCTTCAGCGAGGATGGAATAACAAGTCAAAGCTGCTTGTGgtcagttaca ... actgtttcagGTAGAGGATTTGACTGCTAGACAAGTTTATGAGAAACTTTTGGAGGCTGTG
EST:
gi|208213033|gb|GE010524.1|GE010524EST: GTCAGATGACTCTTCAGCGAGGATGGAATAACAAGTCAAAGCTGCTTGTG GTAGAGGATTTGACTGCTAGACAAGTTTATGAGAAACTTTTGGAGGCTGTG
genomic: GTCAGATGACTCTTCAGCGAGGATGGAATAACAAGTCAAAGCTGCTTGTGgtcagttaca ... actgtttcagGTAGAGGATTTGACTGCTAGACAAGTTTATGAGAAACTTTTGGAGGCTGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAACAACGAACTCTTGGAATTTATGGGAAAAGTTTTGGGCTTGAGATTGAGTCAGATGACTCTTCAGCGAGGATGGAATAACAAGTCAAAGCTGCTTGTGgtcagttacattctaatcaatttcgccttcttctttccattttaactaattctcttttacatttcacgactgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT