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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgggcaattaacagtaacttaaaaaaaaaatcatctgctgaataaaaactatgctgatgatgggcatacgagtgtattaaaattattttatcttcacagGAATGCGATTATCTCAGGGCTATTGCTCTCCCTCGCCTGCATATTTCAAATGTTGTGGATACAAAAACTGGAAAG

Basic information

species Glycine max
transcript GLYMA20G39250.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58024971|gb|CX711712.1|CX711712
EST:     TTAACTGGTCTCCACGAATTATTTTACTCCACAACTTCCTGAGCATGGAG                         GAATGCGATTATCTCAGGGCTATTGCTCTCCCTCGCCTGCATATTTCAAAT
genomic: TTAACTGGTCTCCACGAATTATTTTACTCCACAACTTCCTGAGCATGGAGgtatgacctc ... atcttcacagGAATGCGATTATCTCAGGGCTATTGCTCTCCCTCGCCTGCATATTTCAAAT
EST: gi|151409088|gb|EV278896.1|EV278896
EST:     TTAACTGGTCTCCACGAATTATTTTACTCCACAACTTCCTGAGCATGGAG                         GAATGCGATTATCTCAGGGCTATTGCTCTCCCTCGCCTGCATATTTCAAAT
genomic: TTAACTGGTCTCCACGAATTATTTTACTCCACAACTTCCTGAGCATGGAGgtatgacctc ... atcttcacagGAATGCGATTATCTCAGGGCTATTGCTCTCCCTCGCCTGCATATTTCAAAT
EST: gi|151393423|gb|EV263298.1|EV263298
EST:     TTAACTGGTCTCCACGAATTATTTTACTCCACAACTTCCTGAGCATGGAG                         GAATGCGATTATCTCAGGGCTATTGCTCTCCCTCGCCTGCATATTTCAAAT
genomic: TTAACTGGTCTCCACGAATTATTTTACTCCACAACTTCCTGAGCATGGAGgtatgacctc ... atcttcacagGAATGCGATTATCTCAGGGCTATTGCTCTCCCTCGCCTGCATATTTCAAAT
EST: gi|151400878|gb|EV270692.1|EV270692
EST:     TTAACTGGTCTCCACGAATTATTTTACTCCACAACTTCCTGAGCATGGAG                         GAATGCGATTATCTCAGGGCTATTGCTCTCCCTCGCCTGCATATTTCAAAT
genomic: TTAACTGGTCTCCACGAATTATTTTACTCCACAACTTCCTGAGCATGGAGgtatgacctc ... atcttcacagGAATGCGATTATCTCAGGGCTATTGCTCTCCCTCGCCTGCATATTTCAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaactatgctgatgatgggcatacgagtgtattaaaattattttatcttcacagGAATGCGATTATCTCAGGGCTATTGCTCTCCCTCGCCTGCATATTTCAAATGTTGTGGATACAAAAACTGGAAAG
       tgctgat  putative branch site (score: 3)
                                         ttttatcttc  putative PPT
                          agtgtattaaaattat  TA-rich tract