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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGTTACACCCAAGTCTCTCCTTCTGTTCAAGTACACAATCCCCAACTTGTAGCCTTCTCCCAACCAGTTGCCGACCTACTTGATCTCGACCATAAAGAgtgagtctgtcccataccttatatatcttcaaatacctacctttcattcttgctttttgactttcag

Basic information

species Glycine max
transcript GLYMA20G39090.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213596990|gb|DB966327.1|DB966327
EST:     GTAGCCTTCTCCCAACCAGTTGCCGACCTACTTGATCTCGACCATAAAGA                         ATTTCTGAGGCCAGATTTTCCCCTTTTCTTCTCTGGTGCCACACCTTTAGT
genomic: GTAGCCTTCTCCCAACCAGTTGCCGACCTACTTGATCTCGACCATAAAGAgtgagtctgt ... tgactttcagATTTCAGAGGCCAGATTTTCCCCTTTTCTTCTCTGGTGCCACACCTTTAGT
EST: gi|4306534|gb|AI443918.1|AI443918
EST:     GTAGCCTTCTCCCAACCAGTTGCCGACCTACTTGATCTCGACCATAAAGA                         ATTTCAGAGGCCAGATTTTCCCCTTTTCTTCTCTGGTGCCACACCTTTAGT
genomic: GTAGCCTTCTCCCAACCAGTTGCCGACCTACTTGATCTCGACCATAAAGAgtgagtctgt ... tgactttcagATTTCAGAGGCCAGATTTTCCCCTTTTCTTCTCTGGTGCCACACCTTTAGT
EST: gi|6069747|gb|AW099367.1|AW099367
EST:     GTAGCCTTCTCCCAACCAGTTGCCGACCTACTTGATCTCGACCATAAAGA                         ATTTCAGAGGCCAGATTTTCCCCTTTTCTTCTCTGGTGCCACACCTTTAGT
genomic: GTAGCCTTCTCCCAACCAGTTGCCGACCTACTTGATCTCGACCATAAAGAgtgagtctgt ... tgactttcagATTTCAGAGGCCAGATTTTCCCCTTTTCTTCTCTGGTGCCACACCTTTAGT
EST: gi|213601363|gb|DB956683.1|DB956683
EST:     GTAGCCTTCTCCCAACCAGTTGCCGACCTACTTGATCTCGACCATAAAGA                         ATTTCTGAGGCCAGATTTTCCCCTTTTCTTCTCTGGTGCCACACCTTTAGT
genomic: GTAGCCTTCTCCCAACCAGTTGCCGACCTACTTGATCTCGACCATAAAGAgtgagtctgt ... tgactttcagATTTCAGAGGCCAGATTTTCCCCTTTTCTTCTCTGGTGCCACACCTTTAGT
EST: gi|5666728|gb|AI930764.1|AI930764
EST:     GTAGCCTTCTCCCAACCAGTTGCCGACCTACTTGATCTCGACCATAAAGA                         ATTTCAGAGGCCAGATTTTCCCCTTTTCTTCTCTGGTGCCACACCTTTAGT
genomic: GTAGCCTTCTCCCAACCAGTTGCCGACCTACTTGATCTCGACCATAAAGAgtgagtctgt ... tgactttcagATTTCAGAGGCCAGATTTTCCCCTTTTCTTCTCTGGTGCCACACCTTTAGT