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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttttcttgttctttttgtctattgaactttcagcttggaaaattaggtgattggtagctggttaaaacatattcttttatttcacaatttttctttcttttctctttgcaagTTAGTTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCGACAAAGATTGCAATTACAAAAGGTTCAATTATCAAATCTGGTCAGTGGG

Basic information

species Glycine max
transcript GLYMA20G39050.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193592631|gb|FK545709.1|FK545709
EST:     TGTTGAAGTTGATTCCTTTGAT-A-                         --AGTTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCG
genomic: TGTTGAAGTTGATTCCTTTGATAAGgttagttttt ... tctttgcaagTTAGTTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCG
EST: gi|193341012|gb|FK306364.1|FK306364
EST:     GTAGCCAAACAATTTCTCGGGGTCCTGTTGAAGTTGATTCCTTTGAT-A-                         --AGTTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCG
genomic: GTAGCCAAACAATTTCTCGGGGTCCTGTTGAAGTTGATTCCTTTGATAAGgttagttttt ... tctttgcaagTTAGTTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCG
EST: gi|192300889|gb|FG992949.1|FG992949
EST:     GTAGCCAAACAATTTCTCGGGGTCCTGTTGAAGTTGATTCCTTTGAT-A-                         --AGTTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCG
genomic: GTAGCCAAACAATTTCTCGGGGTCCTGTTGAAGTTGATTCCTTTGATAAGgttagttttt ... tctttgcaagTTAGTTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctggttaaaacatattcttttatttcacaatttttctttcttttctctttgcaagTTAGTTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCGACAAAGATTGCAATTACAAAAGGTTCAATTATCAAATCTGGTCAGTGGG
            tattcttttatttcac  CT-rich tract
     taaaacatattctttt  TA-rich tract