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...gggcatccccacatttctgtagtggatgccagagaatggatctgtcatttatctttttgagtaaacagcaactgaatcaaacggttggttggttgtgcagGCTAGGCATCAAAAAGTTGGGGAGAAGCCTCTTCTCTCAATTTCTACATTTGTGCAG
species | Glycine max |
transcript | GLYMA20G39020.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGACCGAGATTACAAAGGTTTTCTTTGCTATTGTTATGCTTCTTCTCCAG GCTAGGCATCAAAAAGTTGGGGAGAAGCCTCTTCTCTCAATTTCTACATTTEST: gi|8827776|gb|BE211506.1|BE211506
genomic: TGACCGAGATTACAAAGGTTTTCTTTGCTATTGTTATGCTTCTTCTCCAGgttaagatca ... ggttgtgcagGCTAGGCATCAAAAAGTTGGGGAGAAGCCTCTTCTCTCAATTTCTACATTT
EST: TGACCGAGATTACAAAGGTTTTCTTTGCTATTGTTATGCTTCTTCTCCAG GCTAGGCATCAAAAAGTTGGGGAGAAGCCTCTTCTCTCAATTTCTACATTT
genomic: TGACCGAGATTACAAAGGTTTTCTTTGCTATTGTTATGCTTCTTCTCCAGgttaagatca ... ggttgtgcagGCTAGGCATCAAAAAGTTGGGGAGAAGCCTCTTCTCTCAATTTCTACATTT
catttatctttttgagtaaacagcaactgaatcaaacggttggttggttgtgcagGCTAGGCATCAAAAAGTTGGGGAGAAGCCTCTTCTCTCAATTTCTACATTTGTGCAG
atcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggcatccccacatttctgtagtggatgccagagaatggatctgtcatttatctttttgagtaaacagcaactgaatcaaacggttggttggttgtgcagGCTAGGCATCAAAAAGTTGGGGAGAAGCCTCTTCTCTCAATTTCTACATTTGTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - -tccccac
- - - - - - - ttctgta
- - - - - - - - - - - -ggatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttggtt