1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
CTGTATTTTAATCCTGCTACTGTGAAGATGCTAAGCAATTTGAAGgtgatttctagttcactgttctgtatgattgaataccagtattattgcctgcttagtaatagcttgcctatgcgttgcatatggtatatcccttgtgatg...
species | Glycine max |
transcript | GLYMA20G39020.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTGTATTTTAATCCTGCTACTGTGAAGATGCTAAGCAATTTGAAG GTTTTAGTAATAGCACTTCTGTTAAAGGTGATTATGAAGCGCCGGTTTTCCEST: gi|19347272|gb|BM892152.1|BM892152
genomic: CTGTATTTTAATCCTGCTACTGTGAAGATGCTAAGCAATTTGAAGgtgatttcta ... catgtttcagGTTTTAGTAATAGCACTTCTGTTAAAGGTGATTATGAAGCGCCGGTTTTCC
EST: CTGTATTTTAATCCTGCTACTGTGAAGATGCTAAGCAATTTGAAG GTTTTAGTAATAGCACTTCTGTTAAAGGTGATTATGAAGCGCCGGTTTTCCEST: gi|8827776|gb|BE211506.1|BE211506
genomic: CTGTATTTTAATCCTGCTACTGTGAAGATGCTAAGCAATTTGAAGgtgatttcta ... catgtttcagGTTTTAGTAATAGCACTTCTGTTAAAGGTGATTATGAAGCGCCGGTTTTCC
EST: CTGTATTNTAATCCTGCTACTGTGAAGATGCTAAGCAATTTGAAG GTTNTAGTAATAGCACTTCTGTTAAAGGTGATTATGAAGCGCCGGTTTTCCEST: gi|193691881|gb|FK629004.1|FK629004
genomic: CTGTATTTTAATCCTGCTACTGTGAAGATGCTAAGCAATTTGAAGgtgatttcta ... catgtttcagGTTTTAGTAATAGCACTTCTGTTAAAGGTGATTATGAAGCGCCGGTTTTCC
EST: CTGTATTTTAATCCTGCTACTGTGAAGATGCTAAGCAATTTGAAG GTTTTAGTAATAGCACTTCTGTTAAAGGTGATTATGAAGCGCCGGTTTT
genomic: CTGTATTTTAATCCTGCTACTGTGAAGATGCTAAGCAATTTGAAGgtgatttcta ... catgtttcagGTTTTAGTAATAGCACTTCTGTTAAAGGTGATTATGAAGCGCCGGTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTATTTTAATCCTGCTACTGTGAAGATGCTAAGCAATTTGAAGgtgatttctagttcactgttctgtatgattgaataccagtattattgcctgcttagtaatagcttgcctatgcgttgcatatggtatatcccttgtgatg
- - - - - - - - - - - TGAAGA
- - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - TTGAAG