1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...attcccttataatcttccacgtgctattaagtaaaataagaaaaattaaaggaagcccaatattttttttattactaattcatgtgtaacaaatgtccagACTTTTGTGCTGAAGAGGCCAATTGTCTTTCCAAGATCATTGATTTTCTATGTTGTATTCATGATCTTCTACTCTCTGGGTATGGCATTGTCCAAG
species | Glycine max |
transcript | GLYMA20G38930.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTTCTGTTTGGGCATTTATATTGCCAATAACATTTTTCCTTCACATGCAG ACTTTTGTGCTGAAGAGGCCAATTGTCTTTCCAAGATCATTGATTTTCTATEST: gi|192320193|gb|FK014221.1|FK014221
genomic: TTTCTGTTTGGGCATTTATATTGCCAATAACATTTTTCCTTCACATGCAGgttctgtttt ... aaatgtccagACTTTTGTGCTGAAGAGGCCAATTGTCTTTCCAAGATCATTGATTTTCTAT
EST: TTTCTGTTTGGGCATTTATATTGCCAATAACATTTTTCCTTCACATGCAG ACTTTTGTGCTGAAGAGGCCAATTGTCTTTCCAAGATCATTGATTTTCTATEST: gi|26269574|gb|CA820637.1|CA820637
genomic: TTTCTGTTTGGGCATTTATATTGCCAATAACATTTTTCCTTCACATGCAGgttctgtttt ... aaatgtccagACTTTTGTGCTGAAGAGGCCAATTGTCTTTCCAAGATCATTGATTTTCTAT
EST: TTTCTGTTTGGGCATTTATATTGCCAATAACATTTTTCCTTCACATGCAG ACTTTTGTGCTGAAGAGGCCAATTGTTTTTCCAAGATCATTGATTTTCTAT
genomic: TTTCTGTTTGGGCATTTATATTGCCAATAACATTTTTCCTTCACATGCAGgttctgtttt ... aaatgtccagACTTTTGTGCTGAAGAGGCCAATTGTCTTTCCAAGATCATTGATTTTCTAT
ttaaaggaagcccaatattttttttattactaattcatgtgtaacaaatgtccagACTTTTGTGCTGAAGAGGCCAATTGTCTTTCCAAGATCATTGATTTTCTATGTTGTATTCATGATCTTCTACTCTCTGGGTATGGCATTGTCCAAG
aatattttttttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attcccttataatcttccacgtgctattaagtaaaataagaaaaattaaaggaagcccaatattttttttattactaattcatgtgtaacaaatgtccagACTTTTGTGCTGAAGAGGCCAATTGTCTTTCCAAGATCATTGATTTTCTATGTTGTATTCATGATCTTCTACTCTCTGGGTATGGCATTGTCCAAG
-ttccctt
- - - - - - -cttccac
- - - - - - - - - - -tgctatt
- - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - -gaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgtg