1 5' 3' | 2 5' 3' | 3 5' 3' |
...attgctttataagttcttctttgtataaaggaaatttaatgccatagcaggatgatgaactgaagagttgtgttaatcaggctgtttatttatattgtagATTTCAAGATCCATTGGTGATGCCTATCTAAAGAAGGCAGAGTTTAATAAAGCACCATTATTAGCAAAATTTCGACTCTCAGAACCCTTTGATCAGCCAA
species | Glycine max |
transcript | GLYMA20G38800.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGATTGTGGTTATGAAGCACCAGGTCTGGCGCGTGAAGGGTCTGATTCAG ATTTCAAGATCCATTGGTGATGCCTATCTAAAGAAGGCAGAGTTTAATAAAEST: gi|16346172|gb|BI971767.1|BI971767
genomic: AGATTGTGGTTATGAAGCACCAGGTCTGGCGCGTGAAGGGTCTGATTCAGgtgactttta ... tatattgtagATTTCAAGATCCATTGGTGATGCCTATCTAAAGAAGGCAGAGTTTAATAAA
EST: AGATTGTGGTTATGAAGCACCAGGTCTGGCGCGTGAAGGGTCTGATTCAG ATTTCAAGATCCATTGGTGATGCCTATCTAAAGAAGNNNNNNNNNAATAAA
genomic: AGATTGTGGTTATGAAGCACCAGGTCTGGCGCGTGAAGGGTCTGATTCAGgtgactttta ... tatattgtagATTTCAAGATCCATTGGTGATGCCTATCTAAAGAAGGCAGAGTTTAATAAA
agcaggatgatgaactgaagagttgtgttaatcaggctgtttatttatattgtagATTTCAAGATCCATTGGTGATGCCTATCTAAAGAAGGCAGAGTTTAATAAAGCACCATTATTAGCAAAATTTCGACTCTCAGAACCCTTTGATCAGCCAA
tgttaat putative branch site (score: 3)
tttattt putative PPT
tgtttatttatattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgctttataagttcttctttgtataaaggaaatttaatgccatagcaggatgatgaactgaagagttgtgttaatcaggctgtttatttatattgtagATTTCAAGATCCATTGGTGATGCCTATCTAAAGAAGGCAGAGTTTAATAAAGCACCATTATTAGCAAAATTTCGACTCTCAGAACCCTTTGATCAGCCAA
- tgcttta
- - - - - - - - - - - - - aaaggaaa
- - - - - - - - - - - - - - - - - - -aatgcca
- - - - - - - - - - - - - - - - - - - - - - - - - gatgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggctgt