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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCTCAAAAATAATCAGGAAGGAATTGACCCAGATAATGTCTATTCTCAGGTTCCCTATGAGAAAGGTTTTCAGTTCTTATGGCGCATTGAGCGACAGgtatctgaatttatttgcttcttctgatatgtaacatgctcgctctgtgcatcatattcctctttctttcttttttttgggagagattctgcattaacca...

Basic information

species Glycine max
transcript GLYMA20G38780.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38780.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g60460.1 (Oryza sativa), 5'ss of exon 2
AAAGCTCAAAAATAATCAGGAAGGAATTGACCCAGATAATGTCTATTCTCAGGTTCCCTATGAGAAAGGTTTTCAGTTCTTATGGCGCATTGAGCGACAGgtatctg---aatt-----tatttgcttcttctgatatgtaacatgctcgctctgtgcatcatattcctctttctttcttttttttgggagagattctgcattaacca----
 ||||| ||    ||   || ||| |||||||| ||| |||| || ||  | ||||||||||||||||| || || ||| | |||||||||||||| |||||   ||   ||||     |||||| |||  ||| | || ||| | ||          ||||      | ||  |  ||| |  |   |    |||||   |   |      
TAAGCTGAAGCCAAAGATGGCAGGGATTGACCCTGATGATGTGTACTCAGAAGTTCCCTATGAGAAAGGCTTCCAATTCCTTTGGCGCATTGAGCGTCAGgtgagtgcaaaattgcgactatttgtttcaactgttttgcaacgttctttaatcaaa-atcaatgagtttttcatgacttgtcgtgatgtttcattctttttcccctgttag

upper sequence: GLYMA20G38780.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0067g03300.t01 (Vitis vinifera), 5'ss of exon 2
AAAGCTCAAAAATAATCAGGAAGGAATTGACCCAGATAATGTCTATTCTCAGGTTCCCTATGAGAAAGGTTTTCAGTTCTTATGGCGCATTGAGCGACAGgtatctgaatttatttgcttcttctgatatgtaacatgctcgctctgtgcatca-tattcctctttctttcttttttttgggagagattctgcattaacca
 |||||||| |  || ||||||||| | |||||||||||||| |||||||| ||||| |||||||||||||| |||||  ||||||||||||| || ||||||| |   |||    | |       | | ||     | | | ||  || |  | |||     |   | | |||| |||     |  ||| |         
GAAGCTCAAGACCAAGCAGGAAGGAGTCGACCCAGATAATGTATATTCTCAAGTTCCATATGAGAAAGGTTTCCAGTTTCTATGGCGCATTGAACGTCAGgtatgttggtttgacagtt-------agaggttttgaggttgttcaatgaaaaaatatgagattggttgtgttttgtttcttgaatgttcag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298164042|gb|HO013687.1|HO013687
EST:     AGGTTCCCTATGAGAAAGGTTTTCAGTTCTTATGGCGCATTGAGCGACAG                         GTTGGGAGACCTGCATTTGATGAGTTTCTGAAGAAATATATTGCTACCTTC
genomic: AGGTTCCCTATGAGAAAGGTTTTCAGTTCTTATGGCGCATTGAGCGACAGgtatctgaat ... gatgggacagGTTGGGAGACCTGCATTTGATGAGTTTCTGAAGAAATATATTGCTACCTTC
EST: gi|7691304|gb|AW759497.1|AW759497
EST:     AGGTTCCCTATGAGAAAGGTTTTCAGTTCTTATGGCGCATTGAGCGACAG                         GTTGTGAGACCTGCATTTGATGAGTTTCTGAAGAAATATATTGCTACCTTC
genomic: AGGTTCCCTATGAGAAAGGTTTTCAGTTCTTATGGCGCATTGAGCGACAGgtatctgaat ... gatgggacagGTTGGGAGACCTGCATTTGATGAGTTTCTGAAGAAATATATTGCTACCTTC
EST: gi|298175857|gb|HO015262.1|HO015262
EST:     GGTTCCCTATGAGAAAGGTTTTCAGTTCTTATGGCGCATTGAGCGACAG                         GTTGGGAGACCTGCATTTGATGAGTTTCTGAAGAAATATATTGCTACCTTC
genomic: GGTTCCCTATGAGAAAGGTTTTCAGTTCTTATGGCGCATTGAGCGACAGgtatctgaat ... gatgggacagGTTGGGAGACCTGCATTTGATGAGTTTCTGAAGAAATATATTGCTACCTTC
EST: gi|208052060|gb|GD852995.1|GD852995
EST:     TTGAGCGACAG                         GTTGGGAGACCTGCATTTGATGAGTTTCTGAAGAAATATATTGCTACCTTC
genomic: TTGAGCGACAGgtatctgaat ... gatgggacagGTTGGGAGACCTGCATTTGATGAGTTTCTGAAGAAATATATTGCTACCTTC
EST: gi|19270287|gb|BM886543.1|BM886543
EST:     AGGTTCCCTATGAGAAAGGTTTTCAGTTCTTATGGCGCATTGAGCGACAG                         GTTGGGAGACCTGCATTTGATGAGTTTCTGAAGAAATATATTGCTACCTTC
genomic: AGGTTCCCTATGAGAAAGGTTTTCAGTTCTTATGGCGCATTGAGCGACAGgtatctgaat ... gatgggacagGTTGGGAGACCTGCATTTGATGAGTTTCTGAAGAAATATATTGCTACCTTC