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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGCTTCTTTTGTGTTGCGGAAGTACTATGTTTCATTGCTCTACCATTATGAACAAATCTACTTCTTTAAAGCTCGTGAATGGGATCCTATTGCTCCTGgtattttcatataaaccacattgctgattagaattaatgttagggatggggcccatctaagatattagatgtccatttctctttgacagatgtttcgcag

Basic information

species Glycine max
transcript GLYMA20G38760.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38760.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv05s0029g00130.t01 (Vitis vinifera), 5'ss of exon 3
AATGCTTCTTTTGTGTTGCGGAAGTACTATGTTTCATTGCTCTACCATTATGAACAAATCTACTTCTTTAAAGCTCGTGAATGGGATCCTATTGCTCCTGgtattttcatataaaccacattgctgattagaattaatgttaggga--tggggcccatctaagatattagatgtccatttctctttgacagatgtttcgcag
||||| ||||||||  |||| ||||| ||||||||||||||  |||| ||||||||||| ||||||||||||||||  |  ||||  |||||  || ||||| | |  ||  |   | ||    | ||| | || ||||||  |    ||     |||||  |  |     ||| ||                         
AATGCCTCTTTTGTACTGCGCAAGTATTATGTTTCATTGCTTCACCACTATGAACAAATTTACTTCTTTAAAGCTCAGGGTTGGGCACCTATCTCTGCTGgtgtgtgtattgagcactcaactttcatttgtatcaatgttgtgagactgttaatcatctcggggaaactttgtgcag------------------------