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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaaagagcattttgtttagtgagtgctttggattttggacttcaatataatcaatttttattttcctgccatagGGGTGGAGAATGGAATTCAGGTGGTAAGTGTGACAATGAGACAGAACCAATGGAAAGTGAGTCTGACCTAGAAACTCCTGAAATGATGATGACTATTGAC

Basic information

species Glycine max
transcript GLYMA20G38730.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38730.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os06g10560.1 (Oryza sativa), 3'ss of exon 4
gtaacaaagagcattttgtttagtgagtgctt--tggattttggacttcaatataatcaatttttattttcctgc-catagGGGTGGAGAATGGAATTCAGGTGGTAAGTGTGACAATGAGACAGAACCAATGGAAAGTGAGTCTGACCTAGAAACTCCTGAAATGATGATGACTATTGAC
|||   |    | |||||||| | ||    ||   | || | ||   |  |   |||    || |  | ||        || |||||  ||||||||||||||||||  |||||||| ||||||||||||||   || |||     ||||   |||      |   | |||||  |||   
gtatatatcgcctttttgttttgcgaaaatttgacgaatctcgggtcttgactgaattttgttgtgctctcaaatatgcagTGGTGGGCAATGGAATTCAGGTGGTAGCTGTGACAAAGAGACAGAACCAATAAGAAATGAACAGTACCTGTCAACCTACCCACCAAAGATGAGCATTTTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagtgctttggattttggacttcaatataatcaatttttattttcctgccatagGGGTGGAGAATGGAATTCAGGTGGTAAGTGTGACAATGAGACAGAACCAATGGAAAGTGAGTCTGACCTAGAAACTCCTGAAATGATGATGACTATTGAC
                                   tttttattttcctgcc  CT-rich tract
                   acttcaatataatcaa  TA-rich tract