1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtataagttttagtcctatagattatttctcttttatcgaccgagttgttttcttttgctcaagtccttttcttcttattttgattttcagAGATGAAGTTTTCATTGATGGCCCTCACAAATTTTCTAGAGAAAGACATCAAGATATCTCCCCTAGAAACTCTAGATTTAACTTTGTGCGAGGTAGAGGA
species | Glycine max |
transcript | GLYMA20G38640.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGAGATGTATTGTCTGACTCACTTGATGGGGATAAATTACACAGAGGAAG AGATGAAGTTTTCATTGATGGCCCTCACAAATTTTCTAGAGAAAGACATCAEST: gi|7232258|gb|AW567615.1|AW567615
genomic: AGAGATGTATTGTCTGACTCACTTGATGGGGATAAATTACACAGAGGAAGgtataagttt ... tgattttcagAGATGAAGTTTTCATTGATGGCCCTCACAAATTTTCTAGAGAAAGACATCA
EST: AGAGATGTATTGTCTGACTCACTTGATGGGGATAAATTACACAGAGGAAG AGATGAAGTTTTCATTGATGGCCCTCACAAATTTTCTAGAGAAAGACATCAEST: gi|207786414|gb|GD757519.1|GD757519
genomic: AGAGATGTATTGTCTGACTCACTTGATGGGGATAAATTACACAGAGGAAGgtataagttt ... tgattttcagAGATGAAGTTTTCATTGATGGCCCTCACAAATTTTCTAGAGAAAGACATCA
EST: ATGTATTGTCTGACTCACTTGATGGGGATAAATTACACAGAGGAAG AGATGAAGTTTTCATTGATGGCCCTCACAAATTTTCTAGAGAAAGACATCA
genomic: ATGTATTGTCTGACTCACTTGATGGGGATAAATTACACAGAGGAAGgtataagttt ... tgattttcagAGATGAAGTTTTCATTGATGGCCCTCACAAATTTTCTAGAGAAAGACATCA
tcgaccgagttgttttcttttgctcaagtccttttcttcttattttgattttcagAGATGAAGTTTTCATTGATGGCCCTCACAAATTTTCTAGAGAAAGACATCAAGATATCTCCCCTAGAAACTCTAGATTTAACTTTGTGCGAGGTAGAGGA
ttttgat putative branch site (score: 4)
ttttcttttgctcaag CT-rich tract
ttttcttcttattttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataagttttagtcctatagattatttctcttttatcgaccgagttgttttcttttgctcaagtccttttcttcttattttgattttcagAGATGAAGTTTTCATTGATGGCCCTCACAAATTTTCTAGAGAAAGACATCAAGATATCTCCCCTAGAAACTCTAGATTTAACTTTGTGCGAGGTAGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA