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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATGGCAACGATCAGCGCGGTTCAGGTGGAGTTCCTGGAGTTTCCAGCGGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttcatttaatttctgcatgcctacctccaattaagtttctatgataagaaattaaacaaaagaatgaattgaattatgtatgtatatgcttgtag

Basic information

species Glycine max
transcript GLYMA20G38560.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19936282|gb|BQ080797.1|BQ080797
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|41145818|gb|CK606029.1|CK606029
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGC
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGC
EST: gi|298175709|gb|HO015228.1|HO015228
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|298193229|gb|HO033663.1|HO033663
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGGCGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|16346692|gb|BI972287.1|BI972287
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|298180656|gb|HO022095.1|HO022095
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCGG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|298167098|gb|HO010537.1|HO010537
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|298185924|gb|HO031085.1|HO031085
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|298184051|gb|HO029264.1|HO029264
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|298176125|gb|HO015530.1|HO015530
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|298184637|gb|HO029850.1|HO029850
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|298168212|gb|HO013475.1|HO013475
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|298168008|gb|HO013271.1|HO013271
EST:     GTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATA
genomic: GTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCG-CAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATA
EST: gi|298164595|gb|HO014240.1|HO014240
EST:     GTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATA
genomic: GTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCG-CAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATA
EST: gi|298170778|gb|HO015754.1|HO015754
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATCGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|298184436|gb|HO029649.1|HO029649
EST:     GGTGGTTACTTCACCAGCCTCTGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|15000142|gb|BI320956.1|BI320956
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
EST: gi|298173453|gb|HO016789.1|HO016789
EST:     GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAG                         GGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG
genomic: GGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttc ... atgcttgtagGGGAGAGAGGATTGACGATTGAGGGGAAGTTCATAAAGTTCACAGGCATAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAATGGCAACGATCAGCGCGGTTCAGGTGGAGTTCCTGGAGTTTCCAGCGGTGGTTACTTCACCAGCCTCCGGCAAGACCTATTTCCTCGGCGGCGCAGgttcaatttcatttaatttctgcatgcctacctccaattaagtttctatgataagaaattaaacaaaagaatgaattgaattatgtatgtatatgcttgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA