1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TCTAAAGCCTCGATGCGTGCGAGCCTTGAAGCGGATTTTTATCCTTTGTGATCATGACAGAGATGGTGCCCTCAGTGATGCTGAGCTGAATGATTTTCAGgttgcatttccccttttaagatgacactattaagcatcaaaattgaagcttatttattctcattgtattatagtctttcaccttagagtttgatcataaacattatgttatggtaaggtagtttgtttatatgatttgtgaaaaagctaacaaaatgtttaacag
species | Glycine max |
transcript | GLYMA20G37730.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACAGAGATGGTGCCCTCAGTGATGCTGAGCTGAATGATTTTCAG GTTAAANGTTTCAATGCTCCTTTGCAACCATCTGAAATTGTGGGTGTAAAGEST: gi|37996470|gb|CF808059.1|CF808059
genomic: ACAGAGATGGTGCCCTCAGTGATGCTGAGCTGAATGATTTTCAGgttgcatttc ... tgtttaacagGTTAAATGTTTCAATGCTCCTTTGCAACCATCTGAAATTGTGGGTGTAAAG
EST: ATCATGACAGAGATGGTGCCCTCAGTGATGCTGAGCTGAATGATTTTCAG GTTAAATGTTTCAATGCTCCTTTGCAACCATCTGAAATTGTGGGTGTAAAG
genomic: ATCATGACAGAGATGGTGCCCTCAGTGATGCTGAGCTGAATGATTTTCAGgttgcatttc ... tgtttaacagGTTAAATGTTTCAATGCTCCTTTGCAACCATCTGAAATTGTGGGTGTAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTAAAGCCTCGATGCGTGCGAGCCTTGAAGCGGATTTTTATCCTTTGTGATCATGACAGAGATGGTGCCCTCAGTGATGCTGAGCTGAATGATTTTCAGgttgcatttccccttttaagatgacactattaagcatcaaaattgaagcttatttattctcattgtattatagtctttcaccttagagtttgatcataaacattatgttatggtaaggtagtttgtttatatgatttgtgaaaaagctaacaaaatgtttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA