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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaggccaggtttgccttaataatctaagaaataaaatatatgcaccctttggtttattttcaattggccatatttgatgtctccgaatactatgtgtctcctactgcagGTTAAATGTTACATGCATCAACTGCTATCAGGACTTGAGCACTGTCATAGTCAAAACATACTTCACCGTGATATTAAAGGATCAAACCTTCTTATTGACA

Basic information

species Glycine max
transcript GLYMA20G37360.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G37360.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G05050.1 (Arabidopsis thaliana), 3'ss of exon 3
gttaggccaggtttgccttaataatctaagaaataaaatatatgcaccctttggtttattttcaattggccatatttgatgtctccgaatactatgtgtctcctactgcagGTTAAATGTTACATGCATCAACTGCTATCAGGACTTGAGCACTGTCATAGTCAAAACATACTTCACCGTGATATTAAAGGATCAAACCTTCTTATTGACA
||||||||    |||    ||||   | | ||||| || ||  |                        | || ||   |    |   |||| | | | | |  |    ||||||||||| || ||| | ||||| || ||||| || ||||| || ||||  | |    | || |||||||||||||||||||||||||||||||| ||  
gttaggcc----ttggtgaaatagattcacaaatacaaaatccg-----------------------aggcagatcctaaccttgttaataatgtctatgtttt----cagGTTAAATGCTATATGAAGCAACTACTTTCAGGGCTCGAGCATTGCCATAACCGAGGAGTTCTACACCGTGATATTAAAGGATCAAACCTTCTTATAGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttcaattggccatatttgatgtctccgaatactatgtgtctcctactgcagGTTAAATGTTACATGCATCAACTGCTATCAGGACTTGAGCACTGTCATAGTCAAAACATACTTCACCGTGATATTAAAGGATCAAACCTTCTTATTGACA
                 atttgat  putative branch site (score: 5)
                                          tctcctact  putative PPT
               atatttgat  TA-rich tract