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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caagcatgtaattttctttatgcatgaaacctggtatttattctattagagatactttgagagacttgccttatctttctgtatgtgatgaatcccacagGCTACAAGTACCCGGAGCAATAGCTGGATCTCAACTGGGAGAAGCAGCTCATCGACTTGTCAAAAATACCCTCAACATTAAATCAAATAATACCTCCCAT

Basic information

species Glycine max
transcript GLYMA20G37260.1
intron # 21
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15285204|gb|BI469095.1|BI469095
EST:     CAAAGACAGCAAGCAAGAGAAAG                         GCTACAAGTACCCGGAGCAATAGCTGGATCTCAACTGGGAGAAGCAGCTCA
genomic: CAAAGACAGCAAGCAAGAGAAAGgtgagaatct ... aatcccacagGCTACAAGTACCCGGAGCAATAGCTGGATCTCAACTGGGAGAAGCAGCTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagagatactttgagagacttgccttatctttctgtatgtgatgaatcccacagGCTACAAGTACCCGGAGCAATAGCTGGATCTCAACTGGGAGAAGCAGCTCATCGACTTGTCAAAAATACCCTCAACATTAAATCAAATAATACCTCCCAT
                         ttatcttt  TA-rich tract