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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCAACTGGCAGAGATTGCTAGGGTTTTTTCGGTTAACTTTTTAGTTGTGTGATGCAGATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttcttttatgattttgtgtgatgttggaaactgtgaagctgctatttttttttttacttaagcagatgaatgctacgttttaatatgttatttgcatgaagattgtgttacctttttaatttgttgtgttttgtgtgaag

Basic information

species Glycine max
transcript GLYMA20G37190.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254315878|gb|GR825687.1|GR825687
EST:     ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|193647660|gb|FK593573.1|FK593573
EST:     TCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: TCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|13480907|gb|BG510250.1|BG510250
EST:     GGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: GGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|208106456|gb|GD905573.1|GD905573
EST:     GTTGATGTCCTTCATCCAGGGAGGGCTAATTGTTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAA
genomic: GTTGATGTCCTTCATCCAGGGAGGGCTAA-TG-TTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAA
EST: gi|31470717|gb|CD412745.1|CD412745
EST:     ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|7146365|gb|AW508287.1|AW508287
EST:     TTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: TTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|193325398|gb|FK291830.1|FK291830
EST:     ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|192303061|gb|FG994179.1|FG994179
EST:     ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|9983978|gb|BE658086.1|BE658086
EST:     TGATGCAGATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: TGATGCAGATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|193611659|gb|FK560864.1|FK560864
EST:     ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCAACTGGCAGAGATTGCTAGGGTTTTTTCGGTTAACTTTTTAGTTGTGTGATGCAGATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttcttttatgattttgtgtgatgttggaaactgtgaagctgctatttttttttttacttaagcagatgaatgctacgttttaatatgttatttgcatgaagattgtgttacctttttaatttgttgtgttttgtgtgaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT