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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCACAGAAACATTATGAAGTTCTACACTTCTTGGGTCGATACTGCTAATAGGAACATCAACTTCGTGACTGAAATGTTCACATCCGGTACACTTAGGCAgtaagttctttagttgcaactacattattttctgtccaccattcatttttgtgcattttagatcttgtatagttgaattggttcttcttctttctgatcttcacttgttttaattgtgaaatag

Basic information

species Glycine max
transcript GLYMA20G37180.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G37180.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G28080.2 (Arabidopsis thaliana), 5'ss of exon 3
AGCACAGAAACATTATGAAGTTCTACACTTCTTGGGTCGATACTGCTAATAGGAACATCAACTTCGTGACTGAAATGTTCACATCCGGTACACTTAGGCAgtaagttc-tttagttgcaac-tacattattttctgtccaccattcatttttgtgcattttagatcttgtatagttgaattggttcttcttctttctgatcttcacttgttttaattgtgaaatag
| |||| || ||| |||||||||||| |||||||||||||||| | |||| | ||||||||||| || |||||||||||||| || || ||  | || ||||||| |  | |   |    | ||  | |  |||| |  |  | | | |  |     ||||| |||||  || |  |                                                 
AACACAAAAGCATCATGAAGTTCTACGCTTCTTGGGTCGATACCGATAATCGAAACATCAACTTTGTCACTGAAATGTTCACTTCTGGCACCTTGAGACAgtaagcttatctctctatctcataagtgaagttctcttgataacttactcataatgtttttatatctttcat-gcag-------------------------------------------------

upper sequence: GLYMA20G37180.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G04910.1 (Arabidopsis thaliana), 5'ss of exon 3
AGCACAGAAACATTATGAAGTTCTACACTTCTTGGGTCGATACTGCTAATAGGAACATCAACTTCGTGACTGAAATGTTCACATCCGGTACACTTAGGCAgtaagttctttagttgcaactacattattttctgtccaccattcatttttgtgcattttagatcttgtatagttgaattggttcttcttctttctgatcttcacttgttttaattgtgaaatag
| || |  ||||| ||||| ||||||||||||||||||||||| || ||| | || ||||| ||||| |||||| ||||||| || || ||  | || ||||||| |  |   ||| ||  ||||  |||||||||     ||  |||| ||  || ||  |   |   |   |  || | | |                                        
AACATAAGAACATCATGAAATTCTACACTTCTTGGGTCGATACCGCCAATCGAAATATCAATTTCGTCACTGAATTGTTCACTTCTGGCACCTTAAGACAgtaagattctc--ttgtaa--acatacttttctgtc----gttggttttagtttatctttaacgataacttcatttatggatacag--------------------------------------

upper sequence: GLYMA20G37180.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv05s0020g03380.t01 (Vitis vinifera), 5'ss of exon 3
AGCACAGAAACATTATGAAGTTCTACACTTCTTGGGTCGATACTGCTAATAGGAACATCAACTTCGTGACTGAAATGTTCACATCCGGTACACTTAGGCAgtaagttcttta---gttgcaactacatta-----ttttctgtccaccattca--tttttgtgcattttagatcttgtatagttga--attggttcttcttctttctg--atcttcacttgttttaattgtgaaatag
| ||||  ||||| ||||| ||||||||||| ||||| ||| |||| || |||||||| || || ||||| || |||||||| |||||||| ||||| ||||||||    ||   ||| ||     || |     |||| | |      ||||  || |  ||  |||  ||||| |    |||||  ||| ||     |||| |  |  || |||| ||   || ||| ||   |||
AACACAACAACATCATGAAATTCTACACTTCCTGGGTTGATCCTGCAAACAGGAACATTAATTTTGTGACAGAGATGTTCACCTCCGGTACTCTTAGACAgtaagtatcatacaagttccatgattatgaatgcctttttttttttttgttcaatttctcttgattttctgatctgggcatgttgagaatttgtgtaaattctgtgagcaattttcattttcatttattttgtggtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193694600|gb|FK627294.1|FK627294
EST:     GGAACATCAACTTCGTGACTGAAATGTTCACATCCGGTAACACTTAGGCA                         GTATAGGCTAAAGCACAAGAGAGTTAACATCAGAGCAGTGAAGCATT
genomic: GGAACATCAACTTCGTGACTGAAATGTTCACATCCGGTA-CACTTAGGCAgtaagttctt ... tgtgaaatagGTATAGGCTAAAGCACAAGAGAGTTAACATCAGAGCAGTGAAGCATT