1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TCAATCTTTGTACCGTGAGGGACCTGGTAAAGATCCATATAGACCTGATCAAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAGgtagcaccttgttgactatgcttctcctatgcatataatatattgcccttaaaattgcatgttatctagatgctttgtagctgcggtgtatgagatccta...
species | Glycine max |
transcript | GLYMA20G37170.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAG GACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCGEST: gi|120496110|gb|EH224277.1|EH224277
genomic: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAGgtagcacctt ... ttttgttcagGACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
EST: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAG GACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCGEST: gi|193649916|gb|FK594505.1|FK594505
genomic: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAGgtagcacctt ... ttttgttcagGACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
EST: TGGATCTTACACAAAGCAG GACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCGEST: gi|209697808|gb|BW663939.1|BW663939
genomic: TGGATCTTACACAAAGCAGgtagcacctt ... ttttgttcagGACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
EST: AAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTTACACAAAGCAG GACTACATAGACAGCATGGAAGGGTGCAACCTTGTTCTGGCAGACAAAGTTEST: gi|209724168|gb|BW659702.1|BW659702
genomic: AAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTT-ACACAAAGCAGgtagcacctt ... ttttgttcagGACTACATAGACAGCATGGAAGG-TGCAACCTTGT-CTGGCAGACAA-GCT
EST: AAAAGACGCCAGTGAAGAATTTCTTTCTTGATGGATCTTACACAAAGCAG GACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCGEST: gi|209716761|gb|BW682243.1|BW682243
genomic: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAGgtagcacctt ... ttttgttcagGACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
EST: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAG GACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCGEST: gi|23064255|gb|BU579028.1|BU579028
genomic: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAGgtagcacctt ... ttttgttcagGACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
EST: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAG GACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCGEST: gi|213602074|gb|DB981924.1|DB981924
genomic: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAGgtagcacctt ... ttttgttcagGACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
EST: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAG GACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCGEST: gi|120495894|gb|EH224061.1|EH224061
genomic: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAGgtagcacctt ... ttttgttcagGACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
EST: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAG GACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCGEST: gi|214007199|gb|DB986191.1|DB986191
genomic: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAGgtagcacctt ... ttttgttcagGACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
EST: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAG GACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCGEST: gi|23064112|gb|BU578885.1|BU578885
genomic: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAGgtagcacctt ... ttttgttcagGACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
EST: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAG GACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCGEST: gi|207805117|gb|GD780670.1|GD780670
genomic: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAGgtagcacctt ... ttttgttcagGACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
EST: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAG GACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCGEST: gi|209703398|gb|BW676225.1|BW676225
genomic: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAGgtagcacctt ... ttttgttcagGACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
EST: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAG GACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCGEST: gi|254340372|gb|GR858497.1|GR858497
genomic: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAGgtagcacctt ... ttttgttcagGACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
EST: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAG GACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCGEST: gi|10234566|gb|BE803454.1|BE803454
genomic: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAGgtagcacctt ... ttttgttcagGACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
EST: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAG GACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCGEST: gi|209707946|gb|BW657041.1|BW657041
genomic: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAGgtagcacctt ... ttttgttcagGACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
EST: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAG GACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCGEST: gi|10236984|gb|BE805872.1|BE805872
genomic: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAGgtagcacctt ... ttttgttcagGACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
EST: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAG GACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCEST: gi|120496009|gb|EH224176.1|EH224176
genomic: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAGgtagcacctt ... ttttgttcagGACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGC
EST: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAG GACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCGEST: gi|151398068|gb|EV267946.1|EV267946
genomic: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAGgtagcacctt ... ttttgttcagGACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
EST: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAG GACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCGEST: gi|22928471|gb|BU545610.1|BU545610
genomic: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAGgtagcacctt ... ttttgttcagGACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
EST: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAG GACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCGEST: gi|213616900|gb|DB978890.1|DB978890
genomic: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAGgtagcacctt ... ttttgttcagGACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
EST: AAAAGACGCCAGTGAAGAATTACTTTCTTGCTGGATCTTACACAAAGCAG GACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
genomic: AAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAGgtagcacctt ... ttttgttcagGACTACATAGACAGCATGGAAGGTGCAACCTTGTCTGGCAGACAAGCTTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAATCTTTGTACCGTGAGGGACCTGGTAAAGATCCATATAGACCTGATCAAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAGgtagcaccttgttgactatgcttctcctatgcatataatatattgcccttaaaattgcatgttatctagatgctttgtagctgcggtgtatgagatccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA