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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgttgaattcagaacttgccatttgctaattcaggggtttggttttaaataataaatttgttaaacctttgttgtcattatgatacagGTGAGGATACAATTGGGGATGGCTTGGCCAGAGGAAATATATCAGACAGTTGACTCCACATGGTACTTGAAATGGCAATCAGAGGCAGAATTGAATTTTA

Basic information

species Glycine max
transcript GLYMA20G37040.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G37040.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv14s0030g02190.t01 (Vitis vinifera), 3'ss of exon 4
-------------------------------------gtattgttgaattcagaacttgccatttgctaattcaggggtttggttt-taaataataaatttgttaaacctttg------ttgtcattatgatacagGTGAGGATACAATTGGGGATGGCTTGGCCAGAGGAAATATATCAGACAGTTGACTCCACATGGTACTTGAAATGGCAATCAGAGGCAGAATTGAATTTTA
                                         || ||   | |||| ||    |||  |    ||      || ||| ||  |  |   ||| ||  |   | |      |||   || || ||||| | |||||||  ||||| ||||| ||||| ||||||||  |||| || |||| ||| |||||||||||||||||||| || ||||||||| ||| |||||
gtatttatttaataaacacataacacaataagcccataacctgctgt-cttagaattttttttttcttttcacattttgctgctttatagttgctctttttatttgattctcgctacctttgctgttctgttacagTTAAGGATACGGTTGGGAATGGCATGGCCTGAGGAAATTGATCAAACTGTTGGCTCGACATGGTACTTGAAATGGCAGTCTGAGGCAGAAATGAGTTTTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggggtttggttttaaataataaatttgttaaacctttgttgtcattatgatacagGTGAGGATACAATTGGGGATGGCTTGGCCAGAGGAAATATATCAGACAGTTGACTCCACATGGTACTTGAAATGGCAATCAGAGGCAGAATTGAATTTTA
         ttttaaataataaatt  TA-rich tract